PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022159
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MIKC_MADS
Protein Properties Length: 823aa    MW: 93408.8 Da    PI: 4.8569
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022159genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.55.5e-26959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k+i+n + rqvtfskRr g++KKAeELSvLCdaeva++ifs tgk++eys+
  Cla022159  9 KKIDNLTARQVTFSKRRRGLIKKAEELSVLCDAEVALLIFSATGKFFEYSN 59
               68***********************************************95 PP
2K-box485.5e-17871721398
      K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                + e+ + ++ +L+ke+  + +++R++ GedL+ L+l++L+qLe+ Le +l+++ ++K++ ++++i+ l  k  +l eenk+Lr+++
  Cla022159  87 QLENENSNHVRLNKEVADMSQQLRQMRGEDLQGLNLEDLKQLERLLEVGLTRVLQTKEKKIMSEISALELKGARLMEENKMLRQQM 172
                5788899999*************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.31161IPR002100Transcription factor, MADS-box
SMARTSM004329.4E-37160IPR002100Transcription factor, MADS-box
CDDcd002651.98E-36275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-28374IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-24323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.94188178IPR002487Transcription factor, K-box
PfamPF014862.1E-1489172IPR002487Transcription factor, K-box
SuperFamilySSF540012.13E-33663812No hitNo description
PROSITE profilePS5060022.412671823IPR003653Ulp1 protease family, C-terminal catalytic domain
PfamPF029021.5E-25686806IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:3.30.310.1301.3E-16710810No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008234Molecular Functioncysteine-type peptidase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    Send to blast
MAREKIKIKK IDNLTARQVT FSKRRRGLIK KAEELSVLCD AEVALLIFSA TGKFFEYSNS  60
SVKDVIARYN LHSSNLGKLE YPSLELQLEN ENSNHVRLNK EVADMSQQLR QMRGEDLQGL  120
NLEDLKQLER LLEVGLTRVL QTKEKKIMSE ISALELKGAR LMEENKMLRQ QMLRLSNERT  180
PVLVDSDVHV AAEEGVSSES AANVCSCNSG PPADDDSSDT SLKLGKGVRE HPAAHWFHFE  240
QPKWAKSFDT NLCLVKLWLL LPVHRSLRCA LIYECQHTEF LLTRFQLTDL PFIPLFAMKN  300
APVKGLEVFD FTEEDELPEL ISEKRLSKFK NPNLESNAVL KYEFLECGNL TVINGFIVEG  360
KEIENPHMDV DLDECNRGCD NGISHNPLGT TKEQQIMEEE KYQLDANAKS EVKCHLQDMI  420
VQVDNHVTQS LCSQLGKIGS SSQSPTQGLT CTLPEFTAES EQVDALSDPN GSIKGSSPVS  480
PPSETVEDGV LLNGKSSDNC SSDNEKDDLS DEVVLYPDYI VCGDFYCASP SLTFSHNGIK  540
INGFADYGSN EYLNLEWRVD DVIHIECQCF QRVEYVMIKL HVISKDAGEC DNACDSSGIK  600
EVKIVLVDSY WSEKQQKIRS LDSRYMAIWN MSLDVGIGSD DDDLSGQRHY FPNFDEPFEE  660
VVYPKGDPDA VSISKRDVDL LQPETFVNDT IIDFYIQYLK SQIDPKEKHR FHFFNSFFFR  720
KLADLDKDPS SASDGRAAFL RVRKWTRKVD LFDKDYIFIP INFNLHWSLM VICHPGEVAR  780
YSDEDLMKSM KVPCILHMDS IKGSHAGLKN LIQREGDTLF LRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3eay_A3e-1966178322151Sentrin-specific protease 7
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818233e-91LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132573e-91LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023546149.10.0probable ubiquitin-like-specific protease 2B isoform X3
TrEMBLA0A1S3BCD80.0A0A1S3BCD8_CUCME; probable ubiquitin-like-specific protease 2B isoform X2
STRINGXP_008444928.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-80MIKC_MADS family protein