PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla021984 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | WRKY | ||||||||
Protein Properties | Length: 153aa MW: 17791.5 Da PI: 4.7956 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.4 | 1e-31 | 93 | 151 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+YY+C+ +gCpvkk+ver++edpk+v++tYeg H+he Cla021984 93 LDDGFKWRKYGKKMVKNSPNPRNYYKCSVEGCPVKKRVERDREDPKYVITTYEGVHTHE 151 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.7E-34 | 79 | 151 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-28 | 86 | 151 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.503 | 88 | 153 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.3E-37 | 93 | 152 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.7E-25 | 94 | 151 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MSYNSNQQLT TSESDLSEQP GLEFTDWMFD GWLNENSSSL ADSVMYSVYQ EGEVDEFVGN 60 TIQQGQPSSR DSGREREVRE RFAFKTKSEI EILDDGFKWR KYGKKMVKNS PNPRNYYKCS 120 VEGCPVKKRV ERDREDPKYV ITTYEGVHTH ESS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-26 | 83 | 151 | 7 | 75 | Probable WRKY transcription factor 4 |
2lex_A | 2e-26 | 83 | 151 | 7 | 75 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00531 | DAP | Transfer from AT5G26170 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681823 | 1e-56 | LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014. | |||
GenBank | LN713257 | 1e-56 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004144271.1 | 1e-106 | PREDICTED: probable WRKY transcription factor 50 isoform X1 | ||||
TrEMBL | A0A0A0KD40 | 1e-105 | A0A0A0KD40_CUCSA; Uncharacterized protein | ||||
STRING | XP_004158296.1 | 1e-106 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1120 | 34 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 1e-44 | WRKY DNA-binding protein 50 |