PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021170
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 338aa    MW: 37697.8 Da    PI: 4.8869
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021170genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.75.7e-29125186159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                l+Dg++WrKYGqK+++g++fpr YYrCt++   gC ++k+v+rs++dp+++e+tY+g+H+++
  Cla021170 125 LNDGHSWRKYGQKDIHGANFPRCYYRCTHRnvrGCLATKQVQRSDNDPNIFEVTYRGRHTCS 186
                58***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-28115187IPR003657WRKY domain
PROSITE profilePS5081122.584120183IPR003657WRKY domain
SuperFamilySSF1182909.15E-26123187IPR003657WRKY domain
SMARTSM007741.2E-39125187IPR003657WRKY domain
PfamPF031069.2E-27126185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEIMEHKNLI SQLTQGKELA IQLKTHLHPS SSPQEACLFL TEMIQSSFER ALLLLNFNSS  60
NSNNILFPHQ IALLEEGQEV EVEESSTKNK RKIGKSSDVL KKRKLLPRWT EEVKVCNGTA  120
PEGPLNDGHS WRKYGQKDIH GANFPRCYYR CTHRNVRGCL ATKQVQRSDN DPNIFEVTYR  180
GRHTCSQSTN LGSVVSISTQ NQISEETNQI QQNPNSEILF NFGENNFNLK TEDFSNVFLP  240
CSFEGPMMDP AFIGGGSLSA TAVSPAASDT AWDWSAYDGG DEGGLQRVQS SGESDMTEII  300
SATTSGTNSP ICNGHWDFSL DNIDFDHNFP FDSLDFIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-19125185868OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
189103KRKIGKSSDVLKKRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0368951e-120FJ036895.1 Cucumis sativus clone CU16D01 putative WRKY transcription factor 30 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437915.10.0PREDICTED: probable WRKY transcription factor 46
TrEMBLA0A1S3AVR50.0A0A1S3AVR5_CUCME; probable WRKY transcription factor 46
STRINGXP_008437915.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-42WRKY family protein