PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla021067 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | WRKY | ||||||||
Protein Properties | Length: 223aa MW: 25312 Da PI: 8.8079 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.5 | 1.2e-32 | 149 | 207 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+Hnh+ Cla021067 149 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHS 207 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.0E-34 | 134 | 207 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.12E-28 | 141 | 207 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.608 | 144 | 206 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.5E-38 | 149 | 208 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-25 | 150 | 206 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
METGSQRSSG RGQVVPNINY QVQVSFHLSN APHDPQPIQE MGFVQLEEQS QVLSFLAPNN 60 AAMPPAFTNP TTSAHTSHLL PRPSWSSQQQ VGGTVDPKAG NEENCTGSAS DGSNSWWRNT 120 NPDKSKVKVR RKLREPRFCF QTRSDVDVLD DGYKWRKYGQ KVVKNSLHPR SYYRCTHSNC 180 RVKKRVERLS EDCRMVITTY EGRHNHSPCD DSNSSEHEPF TSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-26 | 140 | 206 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 5e-26 | 140 | 206 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 133 | KVRRKLR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00618 | PBM | Transfer from AT2G44745 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 1e-69 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 1e-69 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022924619.1 | 1e-124 | probable WRKY transcription factor 12 | ||||
Swissprot | Q93WY4 | 2e-65 | WRK12_ARATH; Probable WRKY transcription factor 12 | ||||
TrEMBL | A0A0A0L3J0 | 1e-114 | A0A0A0L3J0_CUCSA; Uncharacterized protein | ||||
STRING | XP_004133758.1 | 1e-114 | (Cucumis sativus) | ||||
STRING | XP_004155207.1 | 1e-114 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7294 | 32 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44745.1 | 6e-68 | WRKY family protein |
Publications ? help Back to Top | |||
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