PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021059
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 370aa    MW: 41971.7 Da    PI: 6.8616
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021059genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.8e-13168219155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h ++Er+RR+++N+ ++ +++l+P++   + ++ + a+i   A++++k+L+
  Cla021059 168 QRMTHIAVERNRRRQMNDHLNVIKSLIPTS---YIQRGDQASIIGGAIDFVKELE 219
                79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-15158229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-13166222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.62E-10166216No hitNo description
PROSITE profilePS5088814.989167218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-10168219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-9173224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MNMLCFLLHF SSHSGFYSFQ FYGEYSETGC SEQEFTSLGF EESEEVCFLT SSLEDRIPFL  60
QMLQSVESQS FKDKEPNFQS LLKLQHLNKP WEEGVSKIQE LVELFSSPIN SETKDQKRPP  120
NSEGMSSESN RNQGLCRTQM EKAPPVTKER RKRKRSKPTK NKEEVESQRM THIAVERNRR  180
RQMNDHLNVI KSLIPTSYIQ RGDQASIIGG AIDFVKELEQ LLESLEALRK ERKGTESGCK  240
GEQLEVGVAS NGRIGEGVCA ELKSEVAEIE VTMIQTHVNL KIKCPKRQGL LLKAIVALED  300
LRLTVLHLNI TTSQATATML YSFNLKIEDE CKLGSAEQIA ATVNQIFSFI NDGRLVNEAK  360
ANFRQYSGSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149154RRKRKR
2150157RKRKRSKP
3168179RMTHIAVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134273.10.0PREDICTED: transcription factor bHLH67
SwissprotO810372e-81BH070_ARATH; Transcription factor bHLH70
TrEMBLA0A0A0L6W20.0A0A0A0L6W2_CUCSA; Uncharacterized protein
STRINGXP_004134273.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68943449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-77bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]