PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021021
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 302aa    MW: 33770.9 Da    PI: 6.7864
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021021genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.61.5e-29144203159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                ++Dgy+WrKYGqK+ ++++ pr+Y++C+sa +Cpvkkkv+rs edp++++ tYegeH h 
  Cla021021 144 VKDGYQWRKYGQKVTRDNPSPRAYFKCSSApNCPVKKKVQRSLEDPTILVATYEGEHSHA 203
                58**************************999****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.189139205IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.4E-28141203IPR003657WRKY domain
SuperFamilySSF1182901.96E-24142203IPR003657WRKY domain
SMARTSM007747.9E-34144204IPR003657WRKY domain
PfamPF031065.0E-24145202IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MMDIFLDLNV DPTSSYANSA MDEALHSSGS ESSSSTLEQE LDRKIQENGK LSQMLRIMYE  60
KYINLQKQVM YLLSHQKQNS EMEGVCSRKR RAEGEEDNYE NLEGICSTRD EDFNRWLKRP  120
RLNGNSKVSK VFVQKDASDP SLVVKDGYQW RKYGQKVTRD NPSPRAYFKC SSAPNCPVKK  180
KVQRSLEDPT ILVATYEGEH SHASHFQTEL SLRSINGGKG SAVPVLATIK PSCATVTLDL  240
IHEDGLFKSP KDYASSESAE AAVWQEFLVQ QMASSLKKDP EFAGIVAGAI SGKVLGNQTN  300
RE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-201432021371WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840260.0GU984026.1 Cucumis sativus WRKY protein (WRKY32) mRNA, complete cds.
GenBankHF9521580.0HF952158.1 Cucumis sativus mRNA for WRKY transcription factor (WRKY32 gene), cultivar Summer Green.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008452857.10.0PREDICTED: probable WRKY transcription factor 40 isoform X2
TrEMBLA0A1S3BUA40.0A0A1S3BUA4_CUCME; probable WRKY transcription factor 40 isoform X2
STRINGXP_008452856.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.16e-62WRKY DNA-binding protein 40