PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla020850

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Nin-like

Protein Properties

Length: 392aa MW: 45079.8 Da PI: 5.8552

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla020850	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	70.5	2.2e-22	301	348	4	51
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 +++++dl++y +lpi +AAk++++clTv+K+iCR+ G++RWP+Rk+ks Cla020850 301 RMTVNDLKEYLHLPISEAAKKMNLCLTVVKKICRRSGLRRWPYRKVKS 348 7899*******************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.052	277	369	IPR003035	RWP-RK domain
Pfam	PF02042	1.8E-19	302	348	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MEDSGDDEFP LWKFHRNYPL FTDDILSFMA QIKPTAAELM AKAAAADHNL LPPPSPSREA 60 PAAADLDHWS STVGPSSSNY YYFPGETSHR ERQEQENFQN LGCYGGRGDD GDRGGYSRQL 120 LITPETNAFQ PITCSCCLVL REIVHTNGIN TRKLEIHGRF GILWHAILKE TFPSLSTNSS 180 SFTQYKMFDL SKKSREEVKR FMMQHYLNQM IDEYAALPEP LSDFYDVLCI GLDWNDDDTP 240 ALYPQPLSLY PEGEEEFYEE EEEERENQIQ MEQQPHQPPE LGGRRRVPQT PLARQRQRAG 300 RMTVNDLKEY LHLPISEAAK KMNLCLTVVK KICRRSGLRR WPYRKVKSYQ RKMGALGTRL 360 GSRDAETRAR AEAEMERLRQ ELAQFCAGIV PD

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MEDSGDDEFP LWKFHRNYPL FTDDILSFMA QIKPTAAELM AKAAAADHNL LPPPSPSREA  60
PAAADLDHWS STVGPSSSNY YYFPGETSHR ERQEQENFQN LGCYGGRGDD GDRGGYSRQL  120
LITPETNAFQ PITCSCCLVL REIVHTNGIN TRKLEIHGRF GILWHAILKE TFPSLSTNSS  180
SFTQYKMFDL SKKSREEVKR FMMQHYLNQM IDEYAALPEP LSDFYDVLCI GLDWNDDDTP  240
ALYPQPLSLY PEGEEEFYEE EEEERENQIQ MEQQPHQPPE LGGRRRVPQT PLARQRQRAG  300
RMTVNDLKEY LHLPISEAAK KMNLCLTVVK KICRRSGLRR WPYRKVKSYQ RKMGALGTRL  360
GSRDAETRAR AEAEMERLRQ ELAQFCAGIV PD

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681861	1e-61	LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBank	LN713261	1e-61	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004141337.2	0.0	PREDICTED: uncharacterized protein LOC101213670
STRING	XP_008453076.1	1e-132	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7478	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	2e-10	RWP-RK domain-containing protein