PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla020702

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

MYB

Protein Properties

Length: 223aa MW: 24808.6 Da PI: 8.8507

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla020702	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.3	3.7e-18	38	83	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v+++G+++W++I+r++ gR++k+c++rw + Cla020702 38 KGPWSAEEDRVLTRLVERYGPRNWSLISRYVK-GRSGKSCRLRWCNQ 83 79***************************9.*********985 PP
2	Myb_DNA-binding	53.4	5.9e-17	92	134	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ed+ ++ a+ ++G++ W+tIar ++ gRt++ +k++w++ Cla020702 92 PFSPAEDDAIIAAHSRYGNR-WATIARLLP-GRTDNAVKNHWNST 134 79****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.618	33	88	IPR017930	Myb domain
SuperFamily	SSF46689	5.75E-32	35	131	IPR009057	Homeodomain-like
SMART	SM00717	2.6E-14	37	86	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-17	38	83	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-23	39	91	IPR009057	Homeodomain-like
CDD	cd00167	3.03E-15	40	82	No hit	No description
SMART	SM00717	4.0E-15	89	137	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.884	90	139	IPR017930	Myb domain
CDD	cd00167	2.79E-12	92	135	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.7E-22	92	138	IPR009057	Homeodomain-like
Pfam	PF00249	4.1E-14	92	134	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MDIHNFSSSP STSESSSSDS SLSGKPPPRN SPVQDKIKGP WSAEEDRVLT RLVERYGPRN 60 WSLISRYVKG RSGKSCRLRW CNQLCPGVEH RPFSPAEDDA IIAAHSRYGN RWATIARLLP 120 GRTDNAVKNH WNSTLKRRVR DDRNSAGNHP SDVGRSFLAV DDDPLTALTL ATPGIGSGVD 180 VVPESDRRSE SLPAGFWELM KDVVAREVRE YMTTTFSENL GFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	2e-41	37	139	3	105	C-Myb DNA-Binding Domain
1msf_C	2e-41	37	139	3	105	C-Myb DNA-Binding Domain
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681861	0.0	LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008452503.1	1e-130	PREDICTED: transcriptional activator Myb-like
TrEMBL	A0A1S3BV53	1e-128	A0A1S3BV53_CUCME; transcriptional activator Myb-like
STRING	XP_008452503.1	1e-129	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5074	32	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	4e-56	myb domain protein 77