PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cla020560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 78aa MW: 8604.89 Da PI: 9.2389 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 25.6 | 1.7e-08 | 2 | 18 | 18 | 34 |
GATA 18 gnktLCnaCGlyyrkkg 34 g+ktLCnaCG++y++ + Cla020560 2 GPKTLCNACGVRYKSGR 18 89************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.50.10 | 8.1E-5 | 2 | 17 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 2.38E-5 | 2 | 42 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 78 aa Download sequence Send to blast |
MGPKTLCNAC GVRYKSGRLF PEYRPAASPT FVPSLHSNSH KKVLEMRSKT EENTGAMSIS 60 VQPELIPNTN SAISMDYM |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681896 | 7e-87 | LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016. | |||
GenBank | LN713264 | 7e-87 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022139214.1 | 4e-47 | GATA transcription factor 8 | ||||
Refseq | XP_023552240.1 | 3e-46 | GATA transcription factor 8 | ||||
Swissprot | Q9SV30 | 4e-27 | GATA8_ARATH; GATA transcription factor 8 | ||||
TrEMBL | A0A0A0KRL5 | 1e-44 | A0A0A0KRL5_CUCSA; GATA transcription factor | ||||
TrEMBL | A0A1S3BGY0 | 1e-44 | A0A1S3BGY0_CUCME; GATA transcription factor | ||||
STRING | XP_008446884.1 | 2e-45 | (Cucumis melo) | ||||
STRING | XP_004142426.1 | 2e-45 | (Cucumis sativus) | ||||
STRING | XP_004166767.1 | 2e-45 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4887 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54810.2 | 2e-29 | GATA family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|