PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020363
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TCP
Protein Properties Length: 359aa    MW: 41067.2 Da    PI: 9.3598
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020363genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1302.3e-401462643130
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskksqk 102
                 kkdrhski+T++g+RdRR+Rls+e+a+ fFdLqd+LGfdk+skt+eWL++++  aikel +   s a +c ++s + + s         +++k  +s+k
  Cla020363 146 MKKDRHSKICTSKGPRDRRMRLSLEIARNFFDLQDMLGFDKASKTVEWLFTKSRSAIKELKEKYLSEA-SC-DSSLVRKFS-------VYNDKKVLPSEK 236
                59*************************************************************55555.67.223333322.......223334455555 PP

        TCP 103 saasalnlakesrakarararertrekm 130
                +    + ++kesr karararertr k 
  Cla020363 237 KRRRLRIVDKESRYKARARARERTRAKS 264
                5555689999***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.1E-35147210IPR005333Transcription factor, TCP
PROSITE profilePS5136936.215147205IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.075246263IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MLASSNTDQI SSFPFMNQST PIEKSIQIHD ENHDQNPMSR LFEQQNHPPS LQLIDCYTNY  60
NYNNCNFNPF LDDDQEFILG HILYSQKQQL LGNSNFFGPE IALIETTNNT NNEATTTTRN  120
SSQNKAKTNH TSPKKPISKK RSSNGMKKDR HSKICTSKGP RDRRMRLSLE IARNFFDLQD  180
MLGFDKASKT VEWLFTKSRS AIKELKEKYL SEASCDSSLV RKFSVYNDKK VLPSEKKRRR  240
LRIVDKESRY KARARARERT RAKSIRRGLE ISKTDFEGNP DGVCEMGDVI EEMGSSKRKI  300
THGSLCENEK VLGSNGKNSA SLISNDCEDE RVSKETCSDK IHLLPGSSMD LWPTCSWIP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236240KRRRL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818961e-153LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132641e-153LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011655757.11e-147PREDICTED: transcription factor TCP18-like
TrEMBLA0A0A0KT451e-146A0A0A0KT45_CUCSA; Uncharacterized protein
STRINGXP_008446552.11e-95(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-30TCP domain protein 12