PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla020278

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

bZIP

Protein Properties

Length: 268aa MW: 29485.9 Da PI: 6.3041

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla020278	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.3	8.8e-10	88	135	4	51
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 k+ +r NReA r++R++Kka+ + Le++v L a N++L k+l+ Cla020278 88 KKNKKRPLGNREAVRKYREKKKARAASLEDEVVRLRALNQQLLKRLQG 135 58899999***********************************99974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.8E-13	83	153	No hit	No description
SMART	SM00338	2.0E-10	84	152	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	5.7E-14	87	142	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.232	87	134	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.25E-6	90	134	No hit	No description
CDD	cd14686	5.69E-12	91	144	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071294	Biological Process	cellular response to zinc ion
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MEDGELESSN PEVFSSSNAV ELPSSCSMDS FFDEILKDTH ACTHAHTCNP PGPDYSHTHT 60 CFHVHTKIVS SPTEEKVSTD DTAESVDKKN KKRPLGNREA VRKYREKKKA RAASLEDEVV 120 RLRALNQQLL KRLQGQAALE AEISRLKCLL VDIRGRIEGE IGTFPYRKPA NSDLPNQNVP 180 GSYMVNPCNV QCNDQAYCLH PGDDGKSGES VSLNGQSFSA CDFENLQCLA NQNTGVKELP 240 DCGLGNTISN VNCSELNPKK GKTRALNF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681913	0.0	LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011649294.1	0.0	PREDICTED: uncharacterized protein LOC101219501 isoform X2
Swissprot	Q8GTS2	1e-112	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	A0A0A0LPQ1	0.0	A0A0A0LPQ1_CUCSA; Uncharacterized protein
STRING	XP_004158374.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2567	32	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	1e-100	bZIP family protein

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]