PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020189
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family B3
Protein Properties Length: 220aa    MW: 24341.9 Da    PI: 9.8595
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020189genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.28.6e-20122206191
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                f+k l++s+v ++ ++ lp  f++++   ++++ t+tlede gr ++vk+i  k++    l++GW++F  a++L egD++vF+l+g ++f+
  Cla020189 122 FVKSLVRSHVASLFWMGLPGAFCKSYL--PARDSTMTLEDEAGRHFQVKYIAHKTG----LSAGWRQFSAAHKLLEGDVLVFQLVGPTKFK 206
                89***********************94..345669***************655555....************************9977775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.3E-20114206IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-21116205IPR015300DNA-binding pseudobarrel domain
CDDcd100175.15E-25120206No hitNo description
PROSITE profilePS5086312.238122213IPR003340B3 DNA binding domain
PfamPF023621.8E-17122206IPR003340B3 DNA binding domain
SMARTSM010194.7E-18122208IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MEHECRGKNA ISLKSSAAVT VEDDDVDMTL AQLARTPRHR LASSSGKARK QMEDNPMLQK  60
VKKRLADWKT SHAVTGPGGK FMSFEQNKAA YDEQCSPGEF KSSAVMRALE VRSNLEQEFP  120
SFVKSLVRSH VASLFWMGLP GAFCKSYLPA RDSTMTLEDE AGRHFQVKYI AHKTGLSAGW  180
RQFSAAHKLL EGDVLVFQLV GPTKFKGSVE AKGIDSIMSK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819131e-108LN681913.1 Cucumis melo genomic scaffold, anchoredscaffold00045.
GenBankLN7132651e-108LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457831.11e-138PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A1S3C7331e-136A0A1S3C733_CUCME; B3 domain-containing protein Os01g0234100-like isoform X1
STRINGXP_008457831.11e-137(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-32B3 family protein