PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020082
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 376aa    MW: 43122.6 Da    PI: 5.0195
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020082genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.14.6e-06104127226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                k  lC +f + G+C  G +CkF+H+
  Cla020082 104 KSILCEYFKA-GQCTKGFKCKFSHD 127
                6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.291102129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6102127IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-5102128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-5104128IPR000571Zinc finger, CCCH-type
SMARTSM003562.8172209IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.056172210IPR000571Zinc finger, CCCH-type
PfamPF165433.3E-19229308IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MPPKQQSKAE LAKKAKVVED KTFGLKNKNK SKNVQKYVQN LKQSVQPKVD PTKVAAKVRF  60
SSPFPSKFNL LKKKEEEKAK EKELNDLFKI AVSQPKVPVG VDPKSILCEY FKAGQCTKGF  120
KCKFSHDLNV QRKGEKIDIY SDKRDEETME DWDQETLEKV VESKKNEYNL NKPTEIVCKY  180
FLEAVEKKQY GWFWVCPNGG KECHYRHALP PGYVLKSQMK ELLEEESQKI AIEEEIENER  240
AKVKTTTPMT PELFFQWKKK KMDERDAGLA AQQAERAKND RMSGRELFLA NASLFVDDAE  300
AYEKYQREEE PEADEPKAKD NSTGGPSTST NVVDDSEDVL LDEDDDDELD LDELNELEAS  360
LSRTSIQIRE PGIEAS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818965e-79LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132645e-79LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022139056.10.0zinc finger CCCH domain-containing protein 11
SwissprotQ0JHZ20.0C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A1S3BDM30.0A0A1S3BDM3_CUCME; zinc finger CCCH domain-containing protein 11
STRINGXP_008445838.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44191113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-145C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]