PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla019646 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | WRKY | ||||||||
Protein Properties | Length: 276aa MW: 30132.2 Da PI: 4.9375 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.3 | 4.2e-30 | 76 | 134 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+ver++ dp+++ itY+ eHnh+ Cla019646 76 SDAWAWRKYGQKPIKGSPYPRAYYRCSSSkGCPARKQVERNRLDPTMLLITYSCEHNHS 134 69*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-30 | 69 | 135 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.85E-25 | 72 | 135 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-34 | 75 | 135 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.25 | 76 | 136 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.8E-25 | 77 | 133 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MDDNVTFNNN NHQFFSADQL EDSDESKPAP DSPPPNSAAA ATATKKGRRG MKKKVLSVKI 60 NGDNPRNSSG STTPPSDAWA WRKYGQKPIK GSPYPRAYYR CSSSKGCPAR KQVERNRLDP 120 TMLLITYSCE HNHSGPVSRN NNSNHNQTDA VKPDSPETVP VEVEEKFVEI VGEESLITGD 180 EFSWFGEMET TSSTVLESSI FSGRASSGLV DHSISSDVAM LLPMGDDDMD ESLFADLGEL 240 PECSLVFRRG GGRGLPVDEQ PAAAQRRITP WCGTTT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-18 | 77 | 136 | 16 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00167 | DAP | Transfer from AT1G29280 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU984011 | 1e-125 | GU984011.1 Cucumis sativus WRKY protein (WRKY6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008443496.1 | 1e-167 | PREDICTED: probable WRKY transcription factor 65 isoform X2 | ||||
Swissprot | Q9LP56 | 7e-68 | WRK65_ARATH; Probable WRKY transcription factor 65 | ||||
TrEMBL | A0A1S3B8Z0 | 1e-165 | A0A1S3B8Z0_CUCME; probable WRKY transcription factor 65 isoform X2 | ||||
STRING | XP_008443489.1 | 1e-159 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2770 | 34 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 3e-68 | WRKY DNA-binding protein 65 |
Publications ? help Back to Top | |||
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