PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla019510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | bHLH | ||||||||
Protein Properties | Length: 176aa MW: 20585.9 Da PI: 10.0131 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.5 | 3.7e-11 | 17 | 65 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCH..HHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKa..eiLekAveYIksLq 55 + +Er+RR++++ f++L +llP++ +s+ sK + Le+A +YIk+Lq Cla019510 17 KLIERNRRKEMKALFSTLNSLLPHQ---SSREASKTvpDQLEEAKDYIKELQ 65 689*********************9...77778875449************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.039 | 11 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.33E-6 | 11 | 65 | No hit | No description |
SuperFamily | SSF47459 | 5.76E-11 | 15 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-12 | 16 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.2E-8 | 17 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.3E-4 | 17 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MANNPIRCQP SSQMDRKLIE RNRRKEMKAL FSTLNSLLPH QSSREASKTV PDQLEEAKDY 60 IKELQNNIEK LKKKKEKIIE KNKMLEEDGI RRRCKDEIKP KLLVQVKAYQ VGSSVEVLLT 120 TGSDYHFILQ QILRLLRDNG AEVVNLNQSM FIDRAFHKIT AEVIYYLIHV TKVSFE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008442634.2 | 2e-76 | PREDICTED: transcription factor bHLH118-like | ||||
TrEMBL | A0A1S3B660 | 4e-75 | A0A1S3B660_CUCME; transcription factor bHLH118-like | ||||
STRING | XP_008442634.1 | 2e-75 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21409 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 2e-17 | bHLH family protein |