PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019466
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 469aa    MW: 52322.1 Da    PI: 10.5642
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019466genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.1e-07838232
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg 32
                     +rW t+E++ll  av ++G+g+W+++a ++ 
        Cla019466  8 KRWDTWEELLLGGAVLRHGTGDWNLVATELR 38
                     69**************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002491.7E-5857IPR001005SANT/Myb domain
CDDcd001670.00378956No hitNo description
SMARTSM002971.0E-14256360IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.5E-13256360IPR001487Bromodomain
SuperFamilySSF473708.5E-17261361IPR001487Bromodomain
PfamPF004393.0E-11267344IPR001487Bromodomain
PROSITE profilePS5001411.05271341IPR001487Bromodomain
CDDcd043692.17E-6273355No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MGAEALEKRW DTWEELLLGG AVLRHGTGDW NLVATELRAR IVRPYACTPE VCKAKYEDLR  60
KRFVGCKAWY EELRRQRIME LRQALEHSED SIGSLESKLE ALKSRSGSDK SLVNGSSRSE  120
SWGVVQKPTN ELSAGSFTQE NRTCSSTECQ PAALSTEETE IKPEPLQSLE TGKALRIGKL  180
GGVLYESQGG TVRKRSRGKR KRKDCNREVK EGSSGENNLS ESVNPSTVSQ SKENSCCNSF  240
EARESSDANE ASRSSTMDGV DVLMAAFNSI AENKSASVFR RRLDSQRRGR YKKLIRQHLD  300
IETIRSRVSS HYITTQKELY RDLLLLANNA LVFYSPNSRE HQSAVLLRGL ISSIFQKLMK  360
SCCNMVAHNP HNQRTQIVDL MAKPRRSQPT KCNVSQKEVN PGDVKTPNGN RRRRNNSAKP  420
HSSVGLAKKE TSTSTVKKGS GGTRKAIVGT SKSERSATVV RGRKRGRTK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280293RRLDSQRRGRYKKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146636.10.0PREDICTED: uncharacterized protein LOC101217843
TrEMBLA0A0A0LV170.0A0A0A0LV17_CUCSA; Uncharacterized protein
STRINGXP_004158059.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63041723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.12e-26DNA-binding bromodomain-containing protein