PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla019304 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | NAC | ||||||||
Protein Properties | Length: 244aa MW: 27549.7 Da PI: 5.9034 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.8 | 4.5e-32 | 4 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvka..eekewyfFskrdkkyatgkrknra.........tksgyWkatgk 88 lppGfrF+Pt+eelv eyLk kv ++ l++ ++i+e+ ++ +++Pwd+p+ + + +e+e y Fsk+d +++ + ++ +sgyWka Cla019304 4 LPPGFRFEPTEEELVFEYLKCKVFSSALPA-SIIPEIdGVWNLDPWDIPTGAGGggREEEKYIFSKKDAEAEAEAEEYNNndnmgivgwSRSGYWKARRW 102 79****************************.88****669*********543332266688******998875544433335678888888********* PP NAM 89 dkevlsk..kgelvglkktLvfy.....kgrapkgektdWvmheyrl 128 +ke++s+ + l+g+kktL f +g+++k++kt Wvmheyrl Cla019304 103 EKEIVSSeiGVPLMGMKKTLDFCsigssSGSKRKTKKTGWVMHEYRL 149 ******8555566**********8888779***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.06E-36 | 2 | 181 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 37.367 | 4 | 182 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-20 | 5 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MRGLPPGFRF EPTEEELVFE YLKCKVFSSA LPASIIPEID GVWNLDPWDI PTGAGGGGRE 60 EEKYIFSKKD AEAEAEAEEY NNNDNMGIVG WSRSGYWKAR RWEKEIVSSE IGVPLMGMKK 120 TLDFCSIGSS SGSKRKTKKT GWVMHEYRLQ LQPHYSYSNN TNTNTNTNLE NNKWVLCRIF 180 CNKFNDDHII QRRLHYSISS TNHQDHLLSI TPNALSDDDD SVSSTASSSS TSAATIPNHP 240 FPPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-21 | 4 | 180 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-21 | 4 | 180 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-21 | 4 | 180 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-21 | 4 | 180 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-21 | 4 | 180 | 17 | 163 | NAC domain-containing protein 19 |
4dul_B | 1e-21 | 4 | 180 | 17 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681814 | 2e-50 | LN681814.1 Cucumis melo genomic scaffold, anchoredscaffold00089. | |||
GenBank | LN713256 | 2e-50 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008464389.1 | 2e-64 | PREDICTED: NAC domain-containing protein 83-like | ||||
TrEMBL | A0A1S3CLH3 | 5e-63 | A0A1S3CLH3_CUCME; NAC domain-containing protein 83-like | ||||
STRING | XP_008464389.1 | 9e-64 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24798 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 1e-29 | NAC domain containing protein 83 |