PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019127
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 536aa    MW: 58252.7 Da    PI: 7.2233
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019127genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86e-30217276159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+rs +d +++++tYeg+Hnh+
  Cla019127 217 MNDGCQWRKYGQKIAKGNPCPRAYYRCTGApTCPVRKQVQRSVDDISILITTYEGTHNHP 276
                58**************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-30203278IPR003657WRKY domain
SuperFamilySSF1182909.68E-27210278IPR003657WRKY domain
PROSITE profilePS5081128.357212278IPR003657WRKY domain
SMARTSM007741.4E-35217277IPR003657WRKY domain
PfamPF031061.9E-26218276IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MEAEKALPTI DDKVQSSGGG DEEAAPNPKQ DVLLKDDQHH EERIKRTRVE MREVREENER  60
LKKSLDEIMK DYETLKRKFH EMNHQITQTN GSTINNIDHE VEEEVDDLVS LTLGRFSTHQ  120
NKNTTSSSSL TKLDHQKILD LKQDYIIQTP SIIDRNIQSP THSEPKEEEA GQTWPPSKMS  180
KPSSLPPPPI GEDEVSQQNP PKKARVCVRA RCDTPTMNDG CQWRKYGQKI AKGNPCPRAY  240
YRCTGAPTCP VRKQVQRSVD DISILITTYE GTHNHPLPVS AMAMASTTSA AASMLLSGAS  300
SSTSQPGLNP SFTTATAAAN LHGMNMYLSN NTNSKQFYLS NSSMLSSSLN HPTITLDLTS  360
NPPSTSSSSS PFHKNIPSIN NSYPQKYPFT SLDFGSSQPN FMSWNNNNNS GHQAYSNISK  420
NNAIIGMPSD FAKQLPLHTN IYQAYLQQFS KSSTPPPPPP LPDTIAAATK VITSDPSFQS  480
ALAAALSTII VGGGSGGETG PPTSSFVGGA QAAKSLTCST SKSPSSSPGD SRENGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-19204278174WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818131e-149LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132561e-149LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011660002.10.0PREDICTED: probable WRKY transcription factor 61 isoform X2
TrEMBLA0A0A0LRM60.0A0A0A0LRM6_CUCSA; Uncharacterized protein
STRINGXP_008453182.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.13e-56WRKY DNA-binding protein 61