PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla019099

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

NAC

Protein Properties

Length: 362aa MW: 41116.6 Da PI: 8.4409

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla019099	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.1	1.2e-55	13	139	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtdeel+++yL +kv ++++++ ++i +vd++k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdk++++ +++lv Cla019099 13 LPPGFRFHPTDEELISHYLFEKVMDSSFSC-RAIGDVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKDIYR-GKSLV 110 79**************************.89***********888999************************************.999 PP NAM 101 glkktLvfykgrapkgektdWvmheyrle 129 g+kktLvfy+grapkgek+dWvmheyrle Cla019099 111 GMKKTLVFYRGRAPKGEKSDWVMHEYRLE 139 ***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.23E-64	9	163	IPR003441	NAC domain
PROSITE profile	PS51005	59.567	13	163	IPR003441	NAC domain
Pfam	PF02365	1.0E-28	14	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MAAVVNKQDH LELPPGFRFH PTDEELISHY LFEKVMDSSF SCRAIGDVDL NKSEPWDLPW 60 KAKMGEKEWY FFCVRDRKYP TGLRTNRATE AGYWKATGKD KDIYRGKSLV GMKKTLVFYR 120 GRAPKGEKSD WVMHEYRLEG KLSALNLPKT AKNEWVICRV FQKNSSGKKV DISGMSKLGS 180 FGNDFGHSIL PPLTDSSPFN GETKRPVVQL PNNVPCFSIA MDSQRKLEPM ASSYNTSLFS 240 VIPNPIDSFP RNPHSNSMYS PPNQTFSVPP NLQFQNSVLL QEQQSLLRAL IQNVNDGNTR 300 ESFKPERDKI SISQETCLTT DVNNEISSVF PNLEMGRRPF DNSQEAPPAP MAPIDLDGFW 360 NY

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MAAVVNKQDH LELPPGFRFH PTDEELISHY LFEKVMDSSF SCRAIGDVDL NKSEPWDLPW  60
KAKMGEKEWY FFCVRDRKYP TGLRTNRATE AGYWKATGKD KDIYRGKSLV GMKKTLVFYR  120
GRAPKGEKSD WVMHEYRLEG KLSALNLPKT AKNEWVICRV FQKNSSGKKV DISGMSKLGS  180
FGNDFGHSIL PPLTDSSPFN GETKRPVVQL PNNVPCFSIA MDSQRKLEPM ASSYNTSLFS  240
VIPNPIDSFP RNPHSNSMYS PPNQTFSVPP NLQFQNSVLL QEQQSLLRAL IQNVNDGNTR  300
ESFKPERDKI SISQETCLTT DVNNEISSVF PNLEMGRRPF DNSQEAPPAP MAPIDLDGFW  360
NY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-53	10	169	17	174	NAC domain-containing protein 19
3swm_B	1e-53	10	169	17	174	NAC domain-containing protein 19
3swm_C	1e-53	10	169	17	174	NAC domain-containing protein 19
3swm_D	1e-53	10	169	17	174	NAC domain-containing protein 19
3swp_A	1e-53	10	169	17	174	NAC domain-containing protein 19
3swp_B	1e-53	10	169	17	174	NAC domain-containing protein 19
3swp_C	1e-53	10	169	17	174	NAC domain-containing protein 19
3swp_D	1e-53	10	169	17	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681813	1e-165	LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBank	LN713256	1e-165	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011660158.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-143	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0A0LPF0	0.0	A0A0A0LPF0_CUCSA; Uncharacterized protein
STRING	XP_004154965.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-146	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]