PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018993
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TCP
Protein Properties Length: 326aa    MW: 37626.9 Da    PI: 8.6485
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018993genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.71e-38922422130
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg........... 88 
                  k+drhski T  g+RdRR+Rls+++a++fF Lqd+LG+dk+skt+eWLl qa +aik+l ++++ss+  +   +++ +s +s    +           
  Cla018993  92 SSKRDRHSKINTLHGPRDRRMRLSLPVAREFFGLQDMLGVDKASKTVEWLLFQARHAIKKLSRDQQSSH--VrdRDDDTRSPSSV---Sdgevvsgiide 186
                579*************************************************************66666..22222222222221...112345566666 PP

        TCP  89 ...............kaaksaakskksqksaasalnlakesrakarararertrekm 130
                               ++a+++ +++++ +++++++ la+e r+kararar rtrek+
  Cla018993 187 ttainndinmkelegRKATKK-EKRSRVARKTTFHPLAREYREKARARARARTREKQ 242
                666778888999975555444.444455555568*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.9E-3993242IPR005333Transcription factor, TCP
PROSITE profilePS5136931.66294152IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.55224241IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MFVFNSCSND SISFTDHSFL HFPSPFDDDD ANCTSLDLLQ QQQQPQHDIF LHHNPLNEPA  60
AAPSTRTTID NNDVLQQGMM IEQQIIQRKR ASSKRDRHSK INTLHGPRDR RMRLSLPVAR  120
EFFGLQDMLG VDKASKTVEW LLFQARHAIK KLSRDQQSSH VRDRDDDTRS PSSVSDGEVV  180
SGIIDETTAI NNDINMKELE GRKATKKEKR SRVARKTTFH PLAREYREKA RARARARTRE  240
KQLQIEGTTR IQEPSKISSS WMSTQMENNC EEQLRTRNEG RIIDHETDDC LMIMGRWSPS  300
NSIYYNSLHN NNNGSPQEVN SKHQQT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818131e-163LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132561e-163LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011648749.11e-143PREDICTED: transcription factor DICHOTOMA-like
TrEMBLA0A0A0LPQ91e-149A0A0A0LPQ9_CUCSA; Uncharacterized protein
STRINGXP_008453366.11e-141(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-23TCP domain protein 12