PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla018927 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | WOX | ||||||||
Protein Properties | Length: 157aa MW: 18182.3 Da PI: 10.7224 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 70.8 | 1.6e-22 | 80 | 139 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psa+++++++++l +++ ++V++WFqN++a+e++ Cla018927 80 SRWNPTAEQLRILEELYRRgTRTPSADQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 139 8*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 120.1 | 9.3e-39 | 78 | 141 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+Pt+eQ++iLeely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+ Cla018927 78 SSSRWNPTAEQLRILEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 141 579***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 1.5E-5 | 77 | 144 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-13 | 79 | 144 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-9 | 80 | 139 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.3E-20 | 80 | 139 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.23E-6 | 81 | 141 | No hit | No description |
PROSITE profile | PS50071 | 10.916 | 85 | 140 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MWTLGYDDNG GEFCFSEAFN GGRKLRPLVP RPLPSFHANG ANFSSQYYHL GNHLNEDNKR 60 GLLNNGKSWS GPTPVVVSSS RWNPTAEQLR ILEELYRRGT RTPSADQIQH ITAQLRRYGK 120 IEGKNVFYWF QNHKARERQK RRRQTAAEQT KYSGKQI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681813 | 3e-97 | LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030. | |||
GenBank | LN713256 | 3e-97 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011649155.1 | 4e-83 | PREDICTED: WUSCHEL-related homeobox 1 | ||||
Swissprot | Q6X7K0 | 1e-50 | WOX1_ARATH; WUSCHEL-related homeobox 1 | ||||
TrEMBL | A0A0A0LSV4 | 1e-81 | A0A0A0LSV4_CUCSA; Uncharacterized protein | ||||
STRING | XP_004166032.1 | 2e-82 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2892 | 34 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 4e-45 | WUSCHEL related homeobox 1 |
Publications ? help Back to Top | |||
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