PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018577
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 515aa    MW: 58039.7 Da    PI: 8.5759
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018577genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.0009991109321
                ETTTTEEESSHHHHHHHHH CS
    zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                C  CgksF ++  L  H++
  Cla018577  91 CRECGKSFQSWKALFGHMK 109
                ******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.4931IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.787931IPR007087Zinc finger, C2H2
PfamPF139121.9E-5932IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003550.03189111IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.07489116IPR007087Zinc finger, C2H2
SuperFamilySSF576671.82E-590119No hitNo description
PfamPF139125.6E-791112IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
SuperFamilySSF576674.13E-8346368No hitNo description
SMARTSM003550.25346368IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.242346373IPR007087Zinc finger, C2H2
PfamPF139122.8E-9346370IPR007087Zinc finger, C2H2
PROSITE patternPS000280348368IPR007087Zinc finger, C2H2
SuperFamilySSF576674.13E-8422449No hitNo description
PROSITE profilePS501579.265427449IPR007087Zinc finger, C2H2
SMARTSM003550.3427449IPR015880Zinc finger, C2H2-like
PfamPF139123.6E-9427450IPR007087Zinc finger, C2H2
PROSITE patternPS000280429449IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MEADREFKHF CKLCKRSFPC GRSLGGHMRS HLINSQAETG ENLKKMNLKK AGRNSDMDKF  60
LGDGTSDGYS LRKNPRKTCR LAEFSAEDRF CRECGKSFQS WKALFGHMKC HSTETERVCS  120
NLEFDSQSDN EIAAANRWKR SRRQTRYMAA EISSSFSFAA AAAASSSVSD QNDQEQEEVA  180
LCLMMLSRDV GGFYSTTESS DNNFMPKQVP SPVPKNHFSK VVEAIPSICM GRKMVKLKEF  240
HSKKLEFSEM DSGYLKFEGS NSEFSASAVK RNKNDEKSQL DDRFGSSSNN QTDMNQPQFI  300
SSKFNSDQRK FRELSNGELR SNSFRRSTPN ELNSESYKSK GKRSKFQCNS CNKIFHSYQA  360
LGGHRASHKK TKGCLASKTE NSENSIETEI SNDPTFESKS TATVLEMENQ QESDIHMGYE  420
KKNRKLHQCS ICFKIFSSGQ ALGGHKRSHL ISGSESRNKL PETTSIQKPE AEIRDYLDLN  480
LPAPIDEEGS SHLGSLEPWW VGGNHSHEQA LVGLI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023520174.10.0uncharacterized protein LOC111783475
TrEMBLA0A1S3BJI00.0A0A1S3BJI0_CUCME; zinc finger protein ZAT4-like
STRINGXP_008448369.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.16e-29C2H2-like zinc finger protein