PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla018434

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

G2-like

Protein Properties

Length: 356aa MW: 40915.2 Da PI: 10.1997

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla018434	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100	1.5e-31	178	231	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rF++ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Cla018434 178 PRMRWTSSLHARFIRAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 231 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-28	175	232	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.94E-15	176	232	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-23	178	231	IPR006447	Myb domain, plants
Pfam	PF00249	3.0E-7	179	230	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MLEKGIIVPD LSLQISPPKS NPSPSFDIWQ RTQVPQVDTE LSLSNNSTSA VDVSADRFRP 60 IRGIPVYNNG LFSSSRYFNR NQPTSSSSPP PPPCLSFRSF QQQQQQEAVG RYNGITMEGL 120 RNQQQNIINH QNQNQNQFIF QNQESLHFGV SDFSCNYNNS RSRLLIPRIQ SRRNSRAPRM 180 RWTSSLHARF IRAVELLGGH ERATPKSVLE LMDVKDLTLA HVKSHLQMYR TVKNTDKQTA 240 SSEGSGEEDF LPATPTPHHE ANCLLNHRRG FSNASLEPDV NGSTPSINNH SNSSRLIFFF 300 PLSINFFLFY VSWFGTICFF LSFFLSFFYF YFYLFIFFIT IGKKKKKSIF LGYRSF

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MLEKGIIVPD LSLQISPPKS NPSPSFDIWQ RTQVPQVDTE LSLSNNSTSA VDVSADRFRP  60
IRGIPVYNNG LFSSSRYFNR NQPTSSSSPP PPPCLSFRSF QQQQQQEAVG RYNGITMEGL  120
RNQQQNIINH QNQNQNQFIF QNQESLHFGV SDFSCNYNNS RSRLLIPRIQ SRRNSRAPRM  180
RWTSSLHARF IRAVELLGGH ERATPKSVLE LMDVKDLTLA HVKSHLQMYR TVKNTDKQTA  240
SSEGSGEEDF LPATPTPHHE ANCLLNHRRG FSNASLEPDV NGSTPSINNH SNSSRLIFFF  300
PLSINFFLFY VSWFGTICFF LSFFLSFFYF YFYLFIFFIT IGKKKKKSIF LGYRSF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	179	233	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	179	233	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-17	179	233	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	179	233	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	179	233	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	179	233	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	179	233	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	179	233	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	179	233	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	179	233	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	179	233	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	179	233	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	0.0	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011650937.1	1e-167	PREDICTED: transcription repressor KAN1-like isoform X1
TrEMBL	A0A0A0LVX9	1e-166	A0A0A0LVX9_CUCSA; Uncharacterized protein
STRING	XP_008467044.1	1e-163	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1756	33	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	5e-43	G2-like family protein