PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla018411 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | NAC | ||||||||
Protein Properties | Length: 279aa MW: 31958.5 Da PI: 5.4839 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 140.4 | 1.1e-43 | 5 | 139 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 l pGfrF Pt+eel+ +yL++k+e+ + ++++i+ +diy+++PwdLp+ ++ +e++w++F++r++++a+g r++r t++gyWkatg+ +v Cla018411 5 LIPGFRFYPTEEELILFYLQNKLEDGRddlkQVMDQIIPILDIYDFNPWDLPQyageVCRRDEEQWFYFIPRQESEARGGRPKRLTTTGYWKATGSPSHV 104 579**********************9966643334468889***********646654445788************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyr 127 +s++++ +g+k+t+vfy+grap+g+kt+W m+ey+ Cla018411 105 YSSNHKSIGVKRTMVFYNGRAPTGTKTEWKMNEYK 139 **********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-45 | 3 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.585 | 5 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-21 | 7 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MENYLIPGFR FYPTEEELIL FYLQNKLEDG RDDLKQVMDQ IIPILDIYDF NPWDLPQYAG 60 EVCRRDEEQW FYFIPRQESE ARGGRPKRLT TTGYWKATGS PSHVYSSNHK SIGVKRTMVF 120 YNGRAPTGTK TEWKMNEYKA IDHLNPAGRD PSSNSASSST TTPILRLRQE FSLCRIYKKS 180 KTLRSFDRRP QPREPEMAQF AAGSAQAATT QPPSFTNEPN PTSIAPLTAT ISSPESSSSG 240 DRRGDSSRTT ADTNNELNPE ALLEAAYEPM WDWEQLNWF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-34 | 5 | 179 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-34 | 5 | 179 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-34 | 5 | 179 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-34 | 5 | 179 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-34 | 5 | 179 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 9e-34 | 5 | 179 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 9e-34 | 5 | 179 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 9e-34 | 5 | 179 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 9e-34 | 5 | 179 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 9e-34 | 5 | 179 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 9e-34 | 5 | 179 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 9e-34 | 5 | 179 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 8e-34 | 5 | 179 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 8e-34 | 5 | 179 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681876 | 1e-103 | LN681876.1 Cucumis melo genomic scaffold, anchoredscaffold00068. | |||
GenBank | LN713262 | 1e-103 | LN713262.1 Cucumis melo genomic chromosome, chr_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008462671.1 | 1e-151 | PREDICTED: NAC domain-containing protein 90-like | ||||
TrEMBL | A0A1S3CHI8 | 1e-150 | A0A1S3CHI8_CUCME; NAC domain-containing protein 90-like | ||||
STRING | XP_008462671.1 | 1e-151 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-72 | NAC domain containing protein 90 |