PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla018312 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | TCP | ||||||||
Protein Properties | Length: 206aa MW: 22074.9 Da PI: 8.0236 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 115.7 | 6.2e-36 | 53 | 130 | 6 | 83 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 ++++++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt++ +a ++ s ++s Cla018312 53 SSSKDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPISTISPAMASS 130 689*********************************************************777763332222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.3E-31 | 54 | 167 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.853 | 55 | 109 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MVSEIILHKF PSPSDHHSQP TASHSIVGSN SSPATITHQS LVPRKSTASL SSSSSKDRHT 60 KVNGRGRRVR MPALCAARIF QLTRELGHRS DGETIEWLLR QAEPSIIAAT GTGTVPAAPI 120 STISPAMASS ARSVSCRVQP VTVGGGGQGM FAMPPPSCRL DLCQPVGMEY SAAGSDYRHM 180 PFTALLLQPS TAEEAEERQE EEVFRE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004143267.1 | 1e-120 | PREDICTED: transcription factor TCP11-like | ||||
Swissprot | Q9SJK7 | 7e-45 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | A0A0A0KH86 | 1e-116 | A0A0A0KH86_CUCSA; Uncharacterized protein | ||||
STRING | XP_004156285.1 | 1e-116 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37000.1 | 8e-39 | TCP family protein |