PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017807
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 773aa    MW: 85791.4 Da    PI: 6.7323
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017807genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.1e-085294347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT eE+e +  a +q G++ +++I  +++  +   q++++++ +
        Cla017807 52 AWTREEEESFFTALRQVGKN-FEKITCHVQ-SKNKDQVRHYYYRL 94
                     6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-104499IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-54797IPR009057Homeodomain-like
PROSITE profilePS5129313.6234899IPR017884SANT domain
SMARTSM007172.3E-54997IPR001005SANT/Myb domain
CDDcd001671.08E-55295No hitNo description
PfamPF002499.4E-65294IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    Send to blast
MQTDLIVSSN AETHLHSETI VAHVGDQGIA ASTPDHVIEP LPAKRPTRQW AAWTREEEES  60
FFTALRQVGK NFEKITCHVQ SKNKDQVRHY YYRLVRRMNK LLAPGLCLDA KNSKDTNAAM  120
LRWWSLLEKY SCKASKLHLK PRRFKIFVEA LEHQLLKDRK KNVRKRPLQG ENCPPPIPNA  180
VSNQSSRALG HDGRAVKLVL VDTQNIPKLG PRKTTSRRNV NVGINCGNNG GYPTILKPSR  240
QRRKSEGGVS SAAYKKWEKA AIAGVSLVAD AAEHLERTVT NKDVLRDQNT LGKKNTDPAG  300
SPLLLLPPLQ PNSLIDVASM KLKLQLFPVD DGTRRALESD KHNPHLELTL STRKKISSVL  360
EHLSRKWGNS SAAHGELMLF PYSIQRKSLA DCQRWTQDSF ESAGDVYATI GRPQVFRLRY  420
GWCSNAEHGS VELQTSVPAY CIQDDHIMDA RDIEGRIMDA ASLDAQPVDF NKDEVGTLSK  480
NMSTPTAPCE TERCISARSN DDLPRSSDPV LNMSWNKKNA ADRTIIQRSD DVDDLKLSNG  540
TSLSAGEWAD SLTNISIGDL LSGVSQDVDA NCVDTPLAEG TQCLQQIPFS CDSFDAAIAA  600
HISRQQDKTV SQPTLASHAS SIWDAEETCD AFSFQKNPVI LQEVPSSFTF SSLRGCKHVA  660
RINSMGSNHM TEDLPRSESP AEDHIQGDPM DECQSDPQIS ETKNIDELAD IYWPDSLGPL  720
DLDLPSTNKY HNEELILGDS LSSLNRLIAS SLDAFQNCSF FGFDKKEPSA FNS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442695.10.0PREDICTED: TSL-kinase interacting protein 1 isoform X1
RefseqXP_008442696.10.0PREDICTED: TSL-kinase interacting protein 1 isoform X1
RefseqXP_008442697.10.0PREDICTED: TSL-kinase interacting protein 1 isoform X1
RefseqXP_016899753.10.0PREDICTED: TSL-kinase interacting protein 1 isoform X1
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A1S4DUV70.0A0A1S4DUV7_CUCME; TSL-kinase interacting protein 1 isoform X1
STRINGXP_008442695.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98832531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.30.0TSL-kinase interacting protein 1