PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla017622 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | Dof | ||||||||
Protein Properties | Length: 252aa MW: 27807.9 Da PI: 6.7637 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.1 | 3.5e-37 | 7 | 60 | 7 | 60 |
zf-Dof 7 kcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ Cla017622 7 NCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 60 8***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-26 | 2 | 60 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.8E-31 | 6 | 60 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.677 | 6 | 60 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 8 | 44 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MVEISPNCPR CGSSNTKFCY YNNYSLTQPR YFCKGCRRYW TKGGSLRNVP VGGGCRKNRR 60 PPKPLNLTPS PSNPKFHHSN DGNCHRNHRG LSDHDMSPTI DLAAVYANFV NQKADTPETL 120 PTANTTSNAT GHFSVSGESG GVGCGNYCEF SMQECGLGAN DYQVAGCFGL EENNNDHQVD 180 NIEVAARELQ LPPLPGEDML GGWGNPMIMV NNHHRLQPTR VEMFGMETQD PNLLSGNWSP 240 IDLSNYDTFS RA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00405 | DAP | Transfer from AT3G52440 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008443597.1 | 1e-148 | PREDICTED: dof zinc finger protein DOF3.5 | ||||
TrEMBL | A0A1S3B959 | 1e-147 | A0A1S3B959_CUCME; dof zinc finger protein DOF3.5 | ||||
STRING | XP_008443597.1 | 1e-148 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1817 | 33 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 8e-52 | Dof family protein |