PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017501
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 702aa    MW: 76595.8 Da    PI: 6.6353
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017501genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07277297526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C++f++ G C++Gd C +aHg
  Cla017501 277 PCPDFRK-GACRRGDMCEYAHG 297
                8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484037.93E-166137IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.7E-1812138IPR020683Ankyrin repeat-containing domain
CDDcd002041.89E-1454135No hitNo description
PfamPF127961.8E-956126IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0215787IPR002110Ankyrin repeat
PROSITE profilePS5029715.53957133IPR020683Ankyrin repeat-containing domain
SMARTSM002487.8E-492124IPR002110Ankyrin repeat
PROSITE profilePS5008811.27492127IPR002110Ankyrin repeat
SMARTSM003564.0E-6272298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4277299IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-5277297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582277299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4305335IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.155307331IPR000571Zinc finger, CCCH-type
SMARTSM0035631307330IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MNNLTVETED VFSSLLELAA NDDIDAFKRS IERDPSGIDE IGLWYGRLRG SKQMTNEQRT  60
PLMVAATYGS TEVLKLILSL SCADVNHAVG LDRSTALHCA ASGGAANAVD IVKRLLAAGA  120
DPNMVDGKGH RPVDVIVAPL RHGELKSTLT ELLKTNGLSG DGNLDVLTGA RNSHSPRPSS  180
PLNVPSSASE LVSSPTKSKL SEFPMFSASE KKEYPVDLSL PDIKNSIYST DEFRMYSFKV  240
RPCSRAYSHD WTECPFVHPG ENARRRDPRK FHYSCVPCPD FRKGACRRGD MCEYAHGVFE  300
CWLHPAQYRT RLCKDGTNCS RRVCFFAHTT EELRPLYVST GSAVPSPRSC TSGASAMDYA  360
TVMNLLPGSP SSVPVMSPSP FTPPMSPSAN GMSHSSVAWP QPNVPALHLP GSNIQSSRLR  420
SSLSARDMPV EDFDYLSDFD MQQQQLLNDL NCLSQPPLSS NSLNHSGRLK TMTPSNLDDL  480
FSAESSSPRY SDQALASAVF SPTHKSAVIN QFQQQQTMLS PINTNFSPKN VDHPLLQASF  540
GVPSSGRMSP RNLEPISPVG SRLSMLAQRE KQQFRSLSSR ELGANSASIV GSPANSWSKW  600
GPSNGRPDWA VNADEMGKLR RSSSFELGNN GEEPDLSWVQ SLVKESPTEI KEKQAHPNLG  660
GDSFVSSGES SNMNSQMEAV DHAALGAWLE QMQLDHLVAQ QN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136593.10.0PREDICTED: zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A0A0LBZ40.0A0A0A0LBZ4_CUCSA; Uncharacterized protein
STRINGXP_004136593.10.0(Cucumis sativus)
STRINGXP_004165487.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]