PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017345
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 305aa    MW: 33394.4 Da    PI: 6.9228
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017345genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.33.8e-34131188259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYGqK vk+s+fprsYYrCtsa+C+vkk+vers  dp+vv++tYeg+H+h+
  Cla017345 131 EDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSFADPTVVVTTYEGQHTHP 188
                8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-34115190IPR003657WRKY domain
SuperFamilySSF1182903.79E-29122190IPR003657WRKY domain
PROSITE profilePS5081131.95125190IPR003657WRKY domain
SMARTSM007742.1E-40130189IPR003657WRKY domain
PfamPF031061.6E-26131188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEEIVKKEDT STSTDGGDGT GALFPFSDNV IPNGFFDFSD AEKCSVGFME LLGLNNCELF  60
KDYCSEAFNP PATPNCSSSV SSASSDVVND DDPQQQHNPT TKQLKVKKRK EKKEKEARFA  120
FMTKSEVDHL EDGYRWRKYG QKAVKNSPFP RSYYRCTSAS CNVKKRVERS FADPTVVVTT  180
YEGQHTHPSP ILTRSALAVT IPPPPPTGGP GGGCVGVAAM PWLKATNNAH DGDIIPALSH  240
QYFQNSSFVT PQNSAVSYNR NNPIGAANAA GILQEKRFCN PNATIFLVDH GLLQDVVPPH  300
MLKQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-27120190777Probable WRKY transcription factor 4
2lex_A4e-27120190777Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107114KRKEKKEK
2107115KRKEKKEKE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840400.0GU984040.1 Cucumis sativus WRKY protein (WRKY55) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011651538.11e-144PREDICTED: probable WRKY transcription factor 68 isoform X1
RefseqXP_011651539.11e-144PREDICTED: probable WRKY transcription factor 68 isoform X1
SwissprotO229001e-57WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A1S4DWQ91e-137A0A1S4DWQ9_CUCME; LOW QUALITY PROTEIN: probable WRKY transcription factor 68
STRINGXP_004147997.11e-142(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.11e-45WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]