PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla017270

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

C3H

Protein Properties

Length: 725aa MW: 79434 Da PI: 6.8138

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla017270	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.4e-07	302	322	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Cla017270 302 PCPDFRK-GACRRGDMCEYAHG 322 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	8.71E-17	36	159	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.2E-9	75	149	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.49E-15	79	158	No hit	No description
Gene3D	G3DSA:1.25.40.20	9.0E-18	79	159	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0067	80	110	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	17.873	80	156	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.002	115	147	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.861	115	150	IPR002110	Ankyrin repeat
PRINTS	PR01415	5.1E-5	116	131	IPR002110	Ankyrin repeat
PRINTS	PR01415	5.1E-5	134	148	IPR002110	Ankyrin repeat
SMART	SM00356	4.0E-6	297	323	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.8E-5	302	322	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.2E-4	302	324	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.582	302	324	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.6E-4	330	360	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	52	332	355	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 725 aa Download sequence Send to blast
MCGGPEQSNS ASTTSANSPN PKDMNHLTVD CEDSFYSLLE LASDNDAEGF KRLMESDLYS 60 LNKSGLWYVR QKGSKQVVHE HRTPLMVAAT YGCVDVLKLI LSYPGVDVNL SSGTDKSTAL 120 HCATSGGSVN VVDIVDLLLS AGADPNSKDV NGDRPVDVIF VHPKLQKQNT RFRLEELLNN 180 HSNGSMDVSS LHLSIKTPNS ESPPLSSSLE DEFPSPPKSI SSPKFTDGFG NSTKEKKEYP 240 IDPSLPDIKN SIYATDEFRM FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC 300 VPCPDFRKGA CRRGDMCEYA HGVFECWLHP AQYRTRLCKD GTSCNRRVCF FAHTNEELRP 360 LYVSTGSAVP SPRSIGSAPT VMDMATALGL LPGSPSSVSA LSPSPFTQSM SPSSNGVSHS 420 SVNWQQPNVP TLHLPGSNLQ SSRLRSSLNA RDMPLEDLNV LPDFDNQPRI LNDLNCFSQP 480 RPSAVSVSRS GWTQTLTPNN LEELFSSEIS SSPRFSDPAA NAFSPTRKST MLNQFQQQQQ 540 NMLSPINTSI MSPKNVDHHL LQASFGVSSP GRMSPRSTEP LSPMGSRFSA FVQREKQQHL 600 RTLSSRELGS NVPSSLIGSP VSSLPKWGSP NGKVDWSVGK NELGQLRRSS SFEMGNNGEE 660 PDLSWVQSLV KESPPEMLKE KLAVPGMGAA ASGEGLTTTK SQLESTDHSV IGAWLEQMQL 720 DQLVV

Sequence ? help Back to Top

Protein Sequence Length: 725 aa Download sequence Send to blast

MCGGPEQSNS ASTTSANSPN PKDMNHLTVD CEDSFYSLLE LASDNDAEGF KRLMESDLYS  60
LNKSGLWYVR QKGSKQVVHE HRTPLMVAAT YGCVDVLKLI LSYPGVDVNL SSGTDKSTAL  120
HCATSGGSVN VVDIVDLLLS AGADPNSKDV NGDRPVDVIF VHPKLQKQNT RFRLEELLNN  180
HSNGSMDVSS LHLSIKTPNS ESPPLSSSLE DEFPSPPKSI SSPKFTDGFG NSTKEKKEYP  240
IDPSLPDIKN SIYATDEFRM FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC  300
VPCPDFRKGA CRRGDMCEYA HGVFECWLHP AQYRTRLCKD GTSCNRRVCF FAHTNEELRP  360
LYVSTGSAVP SPRSIGSAPT VMDMATALGL LPGSPSSVSA LSPSPFTQSM SPSSNGVSHS  420
SVNWQQPNVP TLHLPGSNLQ SSRLRSSLNA RDMPLEDLNV LPDFDNQPRI LNDLNCFSQP  480
RPSAVSVSRS GWTQTLTPNN LEELFSSEIS SSPRFSDPAA NAFSPTRKST MLNQFQQQQQ  540
NMLSPINTSI MSPKNVDHHL LQASFGVSSP GRMSPRSTEP LSPMGSRFSA FVQREKQQHL  600
RTLSSRELGS NVPSSLIGSP VSSLPKWGSP NGKVDWSVGK NELGQLRRSS SFEMGNNGEE  660
PDLSWVQSLV KESPPEMLKE KLAVPGMGAA ASGEGLTTTK SQLESTDHSV IGAWLEQMQL  720
DQLVV

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681835	0.0	LN681835.1 Cucumis melo genomic scaffold, anchoredscaffold00064.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004149598.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A1S3CFE0	0.0	A0A1S3CFE0_CUCME; zinc finger CCCH domain-containing protein 30-like
STRING	XP_004172112.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1732	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]