PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla017176 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | GATA | ||||||||
Protein Properties | Length: 282aa MW: 30978 Da PI: 9.2571 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.7 | 7.6e-19 | 203 | 237 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+C++ Tp+WR+gp g+ktLCnaCG++y+k g+ Cla017176 203 CSHCQAQRTPQWRSGPLGPKTLCNACGVRYKKSGR 237 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.0E-17 | 197 | 248 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 13.099 | 197 | 257 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.0E-17 | 199 | 262 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-15 | 200 | 238 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.80E-14 | 202 | 250 | No hit | No description |
Pfam | PF00320 | 2.2E-16 | 203 | 237 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 203 | 228 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MASINSEYEQ DDCSKLGAEF SSTLDDDLYS SQATTMEVDV SLEWLSAFVE ECLSTKGSTL 60 PLPPPQLSTQ LNDPPTKPTS LSQPALPSSN SSFTHFPAVP GKARSKRGRR VPSKTIIRPL 120 VGQQLRQLNL LQNKHSLQLT SSTDPLLLQQ TYWLADSELL LPPKVQGGGG EREKMVDMDQ 180 IEPTAKESLK KQQQQGAGSG RRCSHCQAQR TPQWRSGPLG PKTLCNACGV RYKKSGRLLP 240 EYRPANSPTF VSLLHSNSHK RVMEMRMMNA SSSTSSTFPS SS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681839 | 0.0 | LN681839.1 Cucumis melo genomic scaffold, anchoredscaffold00114. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004141141.1 | 1e-164 | PREDICTED: GATA transcription factor 9-like | ||||
TrEMBL | A0A0A0LD86 | 1e-163 | A0A0A0LD86_CUCSA; Uncharacterized protein | ||||
STRING | XP_004171751.1 | 1e-163 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8487 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 7e-38 | GATA transcription factor 9 |