PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017080
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HD-ZIP
Protein Properties Length: 198aa    MW: 22206.5 Da    PI: 4.4803
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017080genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.21.2e-172431556
               HHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox 15 LeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
               Le+ Fe+++++  e++ +LAkklgL+ rqV vWFqNrRa++k
  Cla017080  2 LEKNFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWK 43
               9****************************************9 PP
2HD-ZIP_I/II115.72.7e-371811393
  HD-ZIP_I/II 13 lLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
                 +LE++Feee+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l ++ +++ ke++ L++e+++
    Cla017080  1 MLEKNFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDSLLSSYDSILKENAVLKSEVAS 81
                 79**************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.649145IPR001356Homeobox domain
SMARTSM003892.5E-7149IPR001356Homeobox domain
SuperFamilySSF466893.59E-16155IPR009057Homeodomain-like
PfamPF000465.7E-15243IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.7E-19252IPR009057Homeodomain-like
CDDcd000866.58E-15246No hitNo description
PRINTSPR000311.8E-61625IPR000047Helix-turn-helix motif
PROSITE patternPS0002702043IPR017970Homeobox, conserved site
PRINTSPR000311.8E-62541IPR000047Helix-turn-helix motif
PfamPF021831.8E-184586IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MLEKNFEEEN KLEPERKSQL AKKLGLQPRQ VAVWFQNRRA RWKTKQLERD YDVLKASYDS  60
LLSSYDSILK ENAVLKSEVA SLTEKCQAQG LNGGEAPIPS ELLLAEIAHV SAPHSGRKAE  120
DRLSSGSDSS AVIDDNCPQL IDSGDSYFPS SEYPQLPNGL QIEHDDTNDN SNYLFSDMFA  180
AANQQNQEGG PPSWWTWT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13745RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818413e-88LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132583e-88LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443498.11e-120PREDICTED: homeobox-leucine zipper protein HAT5
SwissprotQ022833e-62HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A0A0LG541e-119A0A0A0LG54_CUCSA; Uncharacterized protein
TrEMBLA0A1S3B8601e-118A0A1S3B860_CUCME; homeobox-leucine zipper protein HAT5
STRINGXP_008443498.11e-119(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112833039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.16e-47homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]