PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017012
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 312aa    MW: 34947.1 Da    PI: 6.7018
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017012genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv +++q+G+g+W+++++  g+ R+ k+c++rw +yl
        Cla017012 14 KGPWTPEEDIVLVSYIQQHGPGNWRAVPANTGLLRCSKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding49.69.2e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T  E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
        Cla017012  67 RGNFTHHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNHWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.735961IPR017930Myb domain
SuperFamilySSF466898.44E-3111108IPR009057Homeodomain-like
SMARTSM007171.1E-131363IPR001005SANT/Myb domain
PfamPF002491.3E-151461IPR001005SANT/Myb domain
CDDcd001679.96E-111661No hitNo description
PROSITE profilePS5129424.24762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2465116IPR009057Homeodomain-like
SMARTSM007179.4E-1566114IPR001005SANT/Myb domain
PfamPF002494.3E-1467112IPR001005SANT/Myb domain
CDDcd001672.73E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGRPPCCDKQ GVKKGPWTPE EDIVLVSYIQ QHGPGNWRAV PANTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF THHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNHWNT HLKKKLNNHH  120
HHSPPATDLL ADSAGDALFT TRGQWERRLQ TDIQMAKQAL SDALSPETSK PPPPPLPATT  180
ESKKSHHQIP AYASSAGNIA RWLKEWNKNP PSNNPCRSSS SAVVDSGDGS GGIMNGAGLA  240
ESMDTLMSFD YFESSNSDGS PETSVLQGES EMDEVEELLP MKLLEEWLHG DTKDYYFTDF  300
TVDEKFKYDN LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-26141164105MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-251411658159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-251411658159MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-26141164105C-Myb DNA-Binding Domain
1msf_C9e-26141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443415.10.0PREDICTED: myb-related protein 306-like
SwissprotP813921e-100MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A1S3B7Y30.0A0A1S3B7Y3_CUCME; myb-related protein 306-like
STRINGXP_008443415.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74650.11e-79myb domain protein 31
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]