PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016926
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 592aa    MW: 63426.6 Da    PI: 9.507
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016926genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23.1e-054264123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               + C+ C+k F r  nL+ H r H
  Cla016926 42 FICEVCNKGFQREQNLQLHRRGH 64
               89*******************88 PP
2zf-C2H212.50.00045118140123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC +C+k++  +s+ k H +t+
  Cla016926 118 WKCDKCSKRYAVQSDWKAHSKTC 140
                58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF121712.2E-54164IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.994264IPR007087Zinc finger, C2H2
SMARTSM003550.00524264IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-54264IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.67E-84264No hitNo description
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
SMARTSM0035513083113IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.2E-5106139IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.67E-8113138No hitNo description
SMARTSM00355140118138IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MRGQQQQQQQ PPPPPPSNSS TPPNPQQPQK KKRNQPGTPS KFICEVCNKG FQREQNLQLH  60
RRGHNLPWKL KQKSTKEPKR KVYLCPEPTC VHHDPSRALG DLTGIKKHYS RKHGEKKWKC  120
DKCSKRYAVQ SDWKAHSKTC GTREYRCDCG TLFSRRDSFI THRAFCDALA QESARHPPNL  180
GSAIGSHLYG GNSNVGLTLS QVPQISSLQD HPNIPQSPHD VLRLGGGRTG QFTHLLPPSI  240
GSSFRPPPQQ AMPSSNAAAF FLSDQTNQSS FHEDHHQSQS QQGLFGNKAF HGLMQFPSDI  300
QTHASNNNNN SASNLFNLGF ISNPTGDNTS NMNSNNDTNT NNSNSSSNNN NNLPSSLLNQ  360
FNGTNNGNND GPASNIFAVN IMGDQINSAA VPSLYSTAAT GGCSSGTSGG AIPHMSATAL  420
LQKAAQLGST TSSSNTTATL LRTFGSSSSS GGKATDRTLF PPSYGGVVFG ENESNLQDLM  480
NSFTTGSSGS GMFGSGMSSF GGFEGSNRNN MESMEDPTKL QQNLSTVSVG GGADRLTRDF  540
LGVGQVLRSM SGGGGYSQRE HKQPPQGMVL EGNESNTAPS SQAFGGGNGN YQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-34114175364Zinc finger protein JACKDAW
5b3h_F7e-34114175364Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819040.0LN681904.1 Cucumis melo genomic scaffold, anchoredscaffold00053.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140400.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic
TrEMBLA0A0A0KMB90.0A0A0A0KMB9_CUCSA; Uncharacterized protein
STRINGXP_004140400.10.0(Cucumis sativus)
STRINGXP_004157851.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.14e-97indeterminate(ID)-domain 5