PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016728
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 342aa    MW: 37890.4 Da    PI: 7.5875
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016728genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.52.2e-0891115126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt+ C  f   G C+ G++C+FaHg
  Cla016728  91 FKTRMCAKFKL-GLCRNGASCNFAHG 115
                69*********.*************9 PP
2zf-CCCH30.94.7e-10150174125
                --S---SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                +k++lCr f+ + +C+yGdrC+F H
  Cla016728 150 QKMKLCRKFYNGEECPYGDRCNFLH 174
                5999*******66************ PP
3zf-CCCH413.2e-13236262127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +kt+lC  +  tG+C++G++C+FaHg+
  Cla016728 236 WKTKLCTKWEITGHCPFGEKCHFAHGQ 262
                8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.7E-1388123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-789121IPR000571Zinc finger, CCCH-type
SMARTSM003560.002190116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.79890117IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-591115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.403149177IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-5149176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-7149176IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-7150174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-10151175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-17231266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-10234266IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.807235263IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6235262IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-10236262IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSFNDIRASV IPPPLHSYGA NGDASGCWSQ FPRNDPFDPQ SQFEVQQSPF KRARNSEENQ  60
SSPIPYSNPS LNSRVHPPNA PVNKGISNIF FKTRMCAKFK LGLCRNGASC NFAHGVEDMR  120
QPPPNWQEIV GIREDDQSVS NWNDDQKIIQ KMKLCRKFYN GEECPYGDRC NFLHEDPAKF  180
RDDSGRFRES SAISIGTTGT PLINGSDSSY PEPSRATSCS VSDALRANGN ARPSYWKTKL  240
CTKWEITGHC PFGEKCHFAH GQSELQLSIG REGEACSSAL PLIVAMEATT SLTTSVPSSA  300
LLEGQANQCL LKWKGPKKIN RIYADWLDDL PLSPSSTSKM EG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457806.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
SwissprotQ9LT811e-97C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A1S3C7N30.0A0A1S3C7N3_CUCME; zinc finger CCCH domain-containing protein 39-like
STRINGXP_008457806.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-94C3H family protein