PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla016700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | YABBY | ||||||||
Protein Properties | Length: 192aa MW: 21627.4 Da PI: 8.5899 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 213.3 | 8.2e-66 | 6 | 166 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse.kls 102 +s+ eq+Cy+ CnfCn +lavsvP + lf +vtvrCGhC++l svn+a a q l+ ++ + ++ + + +++++ ++++ ++++++ ++ Cla016700 6 NSAQEQLCYIPCNFCNIVLAVSVPCNNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNS---QASNHSHSGSG--ADHYRVELGSSSKCNNKMKMRaPIK 100 6789**********************************************999999986...33344333333..3333333333333333222220333 PP YABBY 103 enedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++++ +r ++rPPekrqrvPsayn+fikeeiqrika+nPdi+hreafs+aaknWahfP+ihfgl Cla016700 101 NSTTDHDQR--IINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGL 166 333333333..479****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 6.9E-71 | 8 | 166 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 6.55E-8 | 108 | 159 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 4.2E-4 | 120 | 158 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MSSCINSAQE QLCYIPCNFC NIVLAVSVPC NNLFDIVTVR CGHCSNLWSV NMAAAFQSLS 60 WQNSQASNHS HSGSGADHYR VELGSSSKCN NKMKMRAPIK NSTTDHDQRI INRPPEKRQR 120 VPSAYNQFIK EEIQRIKATN PDITHREAFS TAAKNWAHFP HIHFGLMLDT NNLQTKNDGS 180 EKHLMSVPGL HY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ667743 | 2e-52 | KJ667743.1 Solanum melongena YAB5 protein mRNA, complete cds. | |||
GenBank | KJ667745 | 2e-52 | KJ667745.1 Solanum aethiopicum YAB5 protein mRNA, complete cds. | |||
GenBank | KJ667747 | 2e-52 | KJ667747.1 Solanum torvum YAB5 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004139305.1 | 1e-137 | PREDICTED: axial regulator YABBY 5-like | ||||
Swissprot | Q8GW46 | 6e-81 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A1S3C5K6 | 1e-132 | A0A1S3C5K6_CUCME; axial regulator YABBY 5 | ||||
STRING | XP_004139305.1 | 1e-137 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 3e-83 | YABBY family protein |
Publications ? help Back to Top | |||
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