PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla016689 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | MYB | ||||||||
Protein Properties | Length: 232aa MW: 26856.7 Da PI: 6.5206 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.3 | 1.1e-15 | 14 | 60 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + W +eEd++l ++v+ +G g+W+t++++ g+ R +k+c++rw +yl Cla016689 14 NLWKPEEDLILRNYVETHGEGNWATVSQESGLMRGGKSCRLRWKNYL 60 56*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1e-16 | 66 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l Cla016689 66 RGGMSKEEEDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 111 67799*****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.72 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.65E-28 | 12 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-12 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-14 | 14 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-21 | 15 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.78E-10 | 16 | 60 | No hit | No description |
PROSITE profile | PS51294 | 23.929 | 61 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-16 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-15 | 66 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 68 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.04E-12 | 69 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MEESKAMKQQ PKKNLWKPEE DLILRNYVET HGEGNWATVS QESGLMRGGK SCRLRWKNYL 60 RPNIKRGGMS KEEEDLIIRM HKLLGNRWSL IAGRLPGRTD NEVKNYWNTH LNKNGLQDKR 120 KANDSNSCKK NDDDNQDDGN NKKQKKVIND NDNGADLAHD TRRRNQAENR EVTDPWNMDD 180 IPSSHYNINS PMVPANNAAF NFDDEPYFDH LDPFFLFEPF GCSSVDASLD NM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-21 | 13 | 113 | 7 | 106 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681847 | 5e-75 | LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003. | |||
GenBank | LN713259 | 5e-75 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022937653.1 | 1e-147 | transcription factor WER-like | ||||
Swissprot | Q9LTF7 | 7e-61 | MYB82_ARATH; Transcription factor MYB82 | ||||
TrEMBL | A0A1S3C427 | 1e-142 | A0A1S3C427_CUCME; transcription factor WER-like | ||||
STRING | XP_004139409.1 | 1e-144 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13545 | 20 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 8e-63 | myb domain protein 82 |