PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016331
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NAC
Protein Properties Length: 562aa    MW: 63127 Da    PI: 4.5148
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016331genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1713.8e-53161422128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                ppGfrFhPtdeel+ +yLk+k+ g+k++l +++ ++d+yk++P++Lp  +k+k+++++w+fFs+rd+ky++g r+nrat++gyWkatgkd++v + ++++
  Cla016331  16 PPGFRFHPTDEELILYYLKRKICGRKIKL-DIVGDIDVYKWDPEELPglSKLKTGDRQWFFFSPRDRKYPNGARSNRATRHGYWKATGKDRTVAC-NSRT 113
                8****************************.99***************6559999*****************************************.999* PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg+kktLvfykgrap+ge+t+Wvmhey++
  Cla016331 114 VGIKKTLVFYKGRAPSGERTNWVMHEYTM 142
                ***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-5914165IPR003441NAC domain
PROSITE profilePS5100555.85815165IPR003441NAC domain
PfamPF023655.0E-2816141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MEVLRPSSAD DDKPWPPGFR FHPTDEELIL YYLKRKICGR KIKLDIVGDI DVYKWDPEEL  60
PGLSKLKTGD RQWFFFSPRD RKYPNGARSN RATRHGYWKA TGKDRTVACN SRTVGIKKTL  120
VFYKGRAPSG ERTNWVMHEY TMDEEELSRC TNVQSYYAVY KVFKKSGPGP KNGEQYGAPF  180
KEEDWVDDVF CDFNNSDDQE IPAEKPKTDA TAIEKETCQA TDFSFDDLDM WMKQITDEAV  240
FEFPEADPCA NSLSLGAGQD ESLSTIDLRS QEHILPRSVE VSNSEQQPSN ALESDFINSD  300
ISQLHPFQNH EAKSAPNISE LASVLFEDDF LEINDLDGPA FNLSNTEKPS GSGNMQFEEL  360
NGLYDLDQFH DAAMFLNDLG PFEYGTAPNL YENENVNNVA NRMDGQIQSN PNCANASQVD  420
NQMPMHDSPI NGLALSELQQ TSGVLCDSSN FVAETKQNEV GEDNSGRRVS SALWAFVESI  480
PTTPASAAEN SLVNHSFDRI SSFSRWRVST TVSAIDSSSL MSRRSGRSRK GGFFLFSVVG  540
ALFAILWVFI GAVRLWQRCI AL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-5011421140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817981e-106LN681798.1 Cucumis melo genomic scaffold, anchoredscaffold00019.
GenBankLN7132551e-106LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008447750.10.0PREDICTED: NAC domain-containing protein 17-like
TrEMBLA0A1S3BI460.0A0A1S3BI46_CUCME; NAC domain-containing protein 17-like
STRINGXP_008447750.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61313451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-125NAC domain containing protein 17