PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla016237

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

HD-ZIP

Protein Properties

Length: 877aa MW: 97973 Da PI: 6.1238

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla016237	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.4	3.2e-20	93	148	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k Cla016237 93 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 148 688899***********************************************998 PP
2	START	100.6	2.7e-32	293	476	2	163
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS...............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv..............dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 la + +elvk+ ++ep+Wv++s e g+e l +e ++ +++ea r+++vv+m++ +lv +ld + +W e ++ ka+t++ Cla016237 293 LAVSSIAELVKMCRSTEPLWVRDS--ESGKEILNVEEHGRMfpwplnlkqhlineFRTEATRDTAVVIMNSITLVDAFLDAN-KWMELFPsivaKAKTVQ 389 6788899***************..99999999998888899***********************************.**99999** PP EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS START 84 vissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163 viss + lqlm+aelq lsplvp R+ f+R+++q +g+w++vd +ds + ++s+ R ++ pSg++i++++ng+s+ Cla016237 390 VISSSvsghatSSLQLMYAELQTLSPLVPtREAHFLRCCQQnADEGSWTVVDFPIDSFHDSL-QHSFPRYRRKPSGCIIQDMPNGYSR 476 *************************************9999*********9987.9********************97 PP
3	START	106.1	5.8e-34	477	590	94	206
EEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS START 94 mvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191 m+aelq lsplvp R+ f+R+++q +g+w++vd +ds + ++s+ R ++ pSg++i++++ng+s+vtwveh++ +++ +h++++ +v+sg+a+ Cla016237 477 MYAELQTLSPLVPtREAHFLRCCQQnADEGSWTVVDFPIDSFHDSL-QHSFPRYRRKPSGCIIQDMPNGYSRVTWVEHAEIEEKPIHQIFNNFVHSGMAF 575 89*********************9999*********9987.9************************************************ PP HHHHHHHHTXXXXXX CS START 192 gaktwvatlqrqcek 206 ga +w+a lqrqce+ Cla016237 576 GAHRWLAILQRQCER 590 ***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.85E-19	81	151	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-20	89	155	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.394	90	150	IPR001356	Homeobox domain
SMART	SM00389	6.0E-19	91	154	IPR001356	Homeobox domain
CDD	cd00086	3.79E-18	93	151	No hit	No description
Pfam	PF00046	9.6E-18	93	148	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	125	148	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	43.642	283	593	IPR002913	START domain
SuperFamily	SSF55961	3.43E-23	285	481	No hit	No description
CDD	cd08875	7.69E-104	287	589	No hit	No description
SMART	SM00234	2.2E-25	292	590	IPR002913	START domain
Pfam	PF01852	1.2E-25	293	476	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	4.9E-4	375	474	IPR023393	START-like domain
Pfam	PF01852	3.7E-28	477	590	IPR002913	START domain
SuperFamily	SSF55961	1.65E-19	477	592	No hit	No description
Gene3D	G3DSA:3.30.530.20	9.9E-5	480	574	IPR023393	START-like domain
SuperFamily	SSF55961	2.47E-15	627	845	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 877 aa Download sequence Send to blast
MYGDCQVMTS NMGGNMVSSE SLFSSPIQNP NFNFMSNFQH FPSVVPKEEN GLMMRGKEDM 60 ESGSGSEQLV EENQGIEMES NNNNDIIQQN QKKKRYHRHT ARQIQEMEAL FKECPHPDDK 120 QRLKLSQELG LKPRQVKFWF QNRRTQMKAQ QDRSDNVILR AENESLKNEN YRLQTALRNI 180 ICPSCGGQGI LGEPSLDEQQ LRLENARLRD QLEQVCSLTT RYTGRPIQGM PSTAPLMQPS 240 LDLDMNIYSR QYTEAIVSSS EMMSLPSMLP PETAHFPEGG LLIEEEKTLA MELAVSSIAE 300 LVKMCRSTEP LWVRDSESGK EILNVEEHGR MFPWPLNLKQ HLINEFRTEA TRDTAVVIMN 360 SITLVDAFLD ANKWMELFPS IVAKAKTVQV ISSSVSGHAT SSLQLMYAEL QTLSPLVPTR 420 EAHFLRCCQQ NADEGSWTVV DFPIDSFHDS LQHSFPRYRR KPSGCIIQDM PNGYSRMYAE 480 LQTLSPLVPT REAHFLRCCQ QNADEGSWTV VDFPIDSFHD SLQHSFPRYR RKPSGCIIQD 540 MPNGYSRVTW VEHAEIEEKP IHQIFNNFVH SGMAFGAHRW LAILQRQCER IASLMARNIS 600 DLGVIPSPEA RQNLMKLAQR MIRTFSVNIS TSGGQSWTAL SDSPDDTVRI TTRKVVEPGQ 660 PNGVILSAVS TTWLPYPHYR VFDLLRDERR RSQLEVLSNG NSLHEVAHIA NGSHPGNCIS 720 LLRINVASNS SQHVELMLQE SCTDQSGSLV IYATIDVDSI QLAMSGEDPS CIPLLPIGFS 780 IVPAIGSTVG GHPAPPPEDG TTNANSSCLL TVGLQVLAST IPSAKLNLSS VTAINNHLCN 840 TVHQINIALG SPGRLENGNN VAEPNNAPTP PPPPPKQ

Sequence ? help Back to Top

Protein Sequence Length: 877 aa Download sequence Send to blast

MYGDCQVMTS NMGGNMVSSE SLFSSPIQNP NFNFMSNFQH FPSVVPKEEN GLMMRGKEDM  60
ESGSGSEQLV EENQGIEMES NNNNDIIQQN QKKKRYHRHT ARQIQEMEAL FKECPHPDDK  120
QRLKLSQELG LKPRQVKFWF QNRRTQMKAQ QDRSDNVILR AENESLKNEN YRLQTALRNI  180
ICPSCGGQGI LGEPSLDEQQ LRLENARLRD QLEQVCSLTT RYTGRPIQGM PSTAPLMQPS  240
LDLDMNIYSR QYTEAIVSSS EMMSLPSMLP PETAHFPEGG LLIEEEKTLA MELAVSSIAE  300
LVKMCRSTEP LWVRDSESGK EILNVEEHGR MFPWPLNLKQ HLINEFRTEA TRDTAVVIMN  360
SITLVDAFLD ANKWMELFPS IVAKAKTVQV ISSSVSGHAT SSLQLMYAEL QTLSPLVPTR  420
EAHFLRCCQQ NADEGSWTVV DFPIDSFHDS LQHSFPRYRR KPSGCIIQDM PNGYSRMYAE  480
LQTLSPLVPT REAHFLRCCQ QNADEGSWTV VDFPIDSFHD SLQHSFPRYR RKPSGCIIQD  540
MPNGYSRVTW VEHAEIEEKP IHQIFNNFVH SGMAFGAHRW LAILQRQCER IASLMARNIS  600
DLGVIPSPEA RQNLMKLAQR MIRTFSVNIS TSGGQSWTAL SDSPDDTVRI TTRKVVEPGQ  660
PNGVILSAVS TTWLPYPHYR VFDLLRDERR RSQLEVLSNG NSLHEVAHIA NGSHPGNCIS  720
LLRINVASNS SQHVELMLQE SCTDQSGSLV IYATIDVDSI QLAMSGEDPS CIPLLPIGFS  780
IVPAIGSTVG GHPAPPPEDG TTNANSSCLL TVGLQVLAST IPSAKLNLSS VTAINNHLCN  840
TVHQINIALG SPGRLENGNN VAEPNNAPTP PPPPPKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681824	1e-168	LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBank	LN713258	1e-168	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018681950.1	0.0	PREDICTED: homeobox-leucine zipper protein ROC3-like isoform X1
Swissprot	Q9FJS2	1e-177	HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBL	M0SQ64	0.0	M0SQ64_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P19010_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10946	30	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	1e-179	homeobox-7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lung SC, et al. Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors. New Phytol., 2018. 218(1): p. 183-200 [PMID:29288621]