PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016222
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 348aa    MW: 38023.7 Da    PI: 7.5182
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016222genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.3e-0888112126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt+lC+ f++ GtC+y  +C+FaH+
  Cla016222  88 FKTKLCCKFRA-GTCPYITNCNFAHS 112
                69*********.*************8 PP
2zf-CCCH18.73.1e-06162187126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                yk + C+ f+    C+yGd+C+F H+
  Cla016222 162 YKGRHCKKFYTEEGCPYGDSCTFLHD 187
                78888********************7 PP
3zf-CCCH41.81.7e-13229254126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt++C+ +  tG+C++G++C+FaHg
  Cla016222 229 WKTRICNKWELTGYCPFGNKCHFAHG 254
                8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.5E-1485120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-885118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8487114IPR000571Zinc finger, CCCH-type
SMARTSM003560.003587113IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-588112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-9160189IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-7160189IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098161189IPR000571Zinc finger, CCCH-type
SMARTSM003560.086161188IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-17224258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-10225259IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-9228255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225228256IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-11229254IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDYSGGNVVH VIPGTSSENW PGEVWATEDE YRAWNNGGDG SVDTPSNSSY DQRQSQSRSG  60
SEPPNKKSRN SQDVTSSNRS KAIGKMFFKT KLCCKFRAGT CPYITNCNFA HSIEELRRPP  120
HNWQEIVAAH EEEKAVLSEP REEFQIPSLG TSNFGSESQR SYKGRHCKKF YTEEGCPYGD  180
SCTFLHDEQS KNRESVAISL GPGGYSGGGG GGGGGGGSGN GSNTKPSNWK TRICNKWELT  240
GYCPFGNKCH FAHGAAELHR YGGGLMETET RDSSSAPPDP KQGVLPKAPG DTVVASVPSV  300
PHSDVYHVVV PSQRSTIVIQ RPGQRTHQKW KGPDKISRIY GDWIDDNE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205217SGGGGGGGGGGGS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818241e-174LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132581e-174LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008465989.10.0PREDICTED: zinc finger CCCH domain-containing protein 12 isoform X2
SwissprotQ9LQM31e-130C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A1S3CQH80.0A0A1S3CQH8_CUCME; zinc finger CCCH domain-containing protein 12 isoform X2
STRINGXP_008465987.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-131C3H family protein