PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015488
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GATA
Protein Properties Length: 361aa    MW: 40774.3 Da    PI: 8.1814
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015488genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.62.7e-16231265133
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                C++Cg ++  Tp++Rrgpdg++tLCnaCGl+++ k
  Cla015488 231 CRHCGISEksTPMMRRGPDGPRTLCNACGLMWANK 265
                *****99999**********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009799.6E-1178113IPR010399Tify domain
PROSITE profilePS5132015.04978113IPR010399Tify domain
PfamPF062005.0E-1384112IPR010399Tify domain
PROSITE profilePS5101713.205155197IPR010402CCT domain
PfamPF062038.3E-16155197IPR010402CCT domain
SMARTSM004011.4E-7225283IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-10226267No hitNo description
Gene3DG3DSA:3.30.50.102.0E-13230265IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.7E-14231265IPR000679Zinc finger, GATA-type
CDDcd002021.08E-11231290No hitNo description
PROSITE patternPS003440231258IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDSIHASDGR MHISHAQHSM HTQSVQDQEH HDLHYMSNGN GLADEHENEG HGIMVVEREV  60
QSDHGDLAEN RGVMVDRGGD NCDQLTLSYQ GQVYVFDSVS PEKVQAVLLL LGGREVPLRV  120
PSIPITNQQN DRHLTDEAFN QALANIPPRL SVPQRLASLI RFREKRKERN FDKKIRYTVR  180
KEVALRMQRN KGQFTSSKPI HEDSSLAIAS WEPNESWSSD GNGSQQQEIL CRHCGISEKS  240
TPMMRRGPDG PRTLCNACGL MWANKVSNIT SFLIPLQKNK VLDGASSKSL QHKFFKKWIP  300
ISMDDVQRLF HSMLGLRGSI ATLMEGLELD GMDVNILRMI QGVKVATKWE YRCLGMKSRG  360
N
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG0038740.0HG003874.1 Cucumis sativus mRNA for GATA transcription factor 24-like, cultivar Summer Green.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267520.10.0GATA transcription factor 24-like
RefseqXP_011658540.10.0PREDICTED: GATA transcription factor 24-like isoform X2
RefseqXP_011658541.10.0PREDICTED: GATA transcription factor 24-like isoform X1
SwissprotQ8GXL71e-108GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A0A0K7I40.0A0A0A0K7I4_CUCSA; Uncharacterized protein
TrEMBLS6DLL30.0S6DLL3_CUCSA; GATA transcription factor 24-like
STRINGXP_004141747.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136512325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.11e-110ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]