PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015232
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C3H
Protein Properties Length: 398aa    MW: 44836.3 Da    PI: 5.8329
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015232genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.8e-06326226
               -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
               k++lC++fa  G C  G+ C F+H+
  Cla015232  3 KRVLCKYFAH-GACLKGEYCEFSHD 26
               99****6666.*************5 PP
2zf-CCCH25.13e-083454526
               --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                C ++++ G C +G+rC++ H+
  Cla015232 34 VCTYYQK-GRCAFGSRCRYDHV 54
               6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.685128IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-5127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-6326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.1122956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00132955IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-53253IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-63454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.192134162IPR000571Zinc finger, CCCH-type
SMARTSM003560.14135161IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.72E-14192268No hitNo description
Gene3DG3DSA:3.30.40.102.4E-10197263IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001621.57E-4203263No hitNo description
PfamPF000971.3E-7204261IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.371204262IPR001841Zinc finger, RING-type
SMARTSM001841.7E-7204261IPR001841Zinc finger, RING-type
PROSITE patternPS005180228237IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.291291320IPR000571Zinc finger, CCCH-type
SMARTSM003560.36291319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MSKRVLCKYF AHGACLKGEY CEFSHDWTAP PSNVCTYYQK GRCAFGSRCR YDHVKVSHAE  60
SSSNSQQSHV SESVSIAHPQ LSRPLSPFPG STSELAGSEI PSLPLRIESA WGGESEHPES  120
LDDWGNGEAR VVGPADIPIC SFAAAGSECP RGENCPHIHG DLCPTCGKQC LHPFRTDERE  180
EHMKACEKKQ KHLESLKNSQ DIECSVCLER VLSKTEIAER KFGLLSECDH PFCISCIRNW  240
RNSSSTSGMD VNSALRACPI CRKLSYFVIP SVIWYSSKEE KQEIVDSYKS RLRSIDCKHF  300
NFGNGNCPFG SSCFYKHLVI PGSYTWKYHR PPPRRPQSWR TPPSRSNIVD MDAFFDMFED  360
LEDLDFSDED LDIEDLTLLE MALMQLGCEA NLSNDEES
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818040.0LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659786.10.0PREDICTED: E3 ubiquitin-protein ligase makorin
SwissprotE0X9N41e-142C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A0A0KBH20.0A0A0A0KBH2_CUCSA; Uncharacterized protein
STRINGXP_004135923.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-137C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]