PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015143
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRAS
Protein Properties Length: 574aa    MW: 65937.1 Da    PI: 5.2072
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015143genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS272.51.4e-832135722374
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev..sPilkfshltaN 99 
                 ++L+++Ae v  +++ +a++lL+r + +as+ g+++qRl++yf++AL++r+ r  ++  ++++        s+ee + ++++  +   P+ ++ hlta 
  Cla015143 213 AHVLFAAAEKVGYHQFDRARRLLQRCEWTASSCGNAVQRLVFYFAKALRKRIER--ETGRESIKE-------SKEEEMNFEALKGCmkLPFQQVMHLTAV 303
                799***************************************************..222233333.......33333333444433115*********** PP

       GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                qaI e v+  ++vH iD++i  G++W a++q+L  s++ +   l+iT+v+s   ++++ +e++g+ L+++Ae+l++pf+f++++++++ +++ e +r++ 
  Cla015143 304 QAIFEHVKMTTKVHLIDLEIRSGVHWSAFMQSLVdSKEIPIKLLKITAVVS---DKSHLIEQVGKWLENVAESLNIPFSFKPILVSDMMEIKEEVFRTED 400
                **********************************66778888*********...578899**************************************** PP

       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                +E++a+ + + l ++ ++++sle+    ++++++ ++P ++vv+e ea++n +sF++rf+eal + ++ fd+l++ + ++++ r+kvE    g+ei+nvv
  Cla015143 401 DEMVAIYCPVVLRSMISRPTSLEN----LMRVIRIINPSIMVVSEIEANYNLTSFVNRFIEALFFTASYFDCLKTCIEEDEDSRRKVEGL-CGKEIENVV 495
                **********************99....************************************************************98.9******** PP

       GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                a eg++r++r  + e Wr+ + ++ ++++++s++  +qakl+ ++++ ++  ++e+++++l+ gWk+ p++svSaW+
  Cla015143 496 ASEGSDRVARSVKIEVWRAFFARFRMEEMEFSDSCLSQAKLVAKRFAyGKFCSLEKNEKCLIVGWKETPIISVSAWQ 572
                ***********************************************88889************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.374186551IPR005202Transcription factor GRAS
PfamPF035144.7E-81213572IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MADDFFSFTP FDFNGSQAET FFPSNGIHEK QETAHRGKED DCPFRMAEFG DFNFLSDNPS  60
GFYQQDISKT GDQTNYQQRN SDYLTFDELM FGNNFTISEL IQKKSKRSEN LATDSFNFNP  120
SKPVSNPCLE SLQLLNSYGT KVKRMKGTIL SERGSEVSEE NKPLSIEEIL RVAGARYVHF  180
FPEGHDDFYM STHPCDFALS GLSEDERADV ELAHVLFAAA EKVGYHQFDR ARRLLQRCEW  240
TASSCGNAVQ RLVFYFAKAL RKRIERETGR ESIKESKEEE MNFEALKGCM KLPFQQVMHL  300
TAVQAIFEHV KMTTKVHLID LEIRSGVHWS AFMQSLVDSK EIPIKLLKIT AVVSDKSHLI  360
EQVGKWLENV AESLNIPFSF KPILVSDMME IKEEVFRTED DEMVAIYCPV VLRSMISRPT  420
SLENLMRVIR IINPSIMVVS EIEANYNLTS FVNRFIEALF FTASYFDCLK TCIEEDEDSR  480
RKVEGLCGKE IENVVASEGS DRVARSVKIE VWRAFFARFR MEEMEFSDSC LSQAKLVAKR  540
FAYGKFCSLE KNEKCLIVGW KETPIISVSA WQFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-3724157232375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818030.0LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451477.20.0PREDICTED: DELLA protein RGL2-like isoform X1
TrEMBLA0A1S3BQZ00.0A0A1S3BQZ0_CUCME; DELLA protein RGL2-like isoform X1
STRINGXP_004136152.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.13e-57RGA-like 2