PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla015142 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | GRAS | ||||||||
Protein Properties | Length: 570aa MW: 64666.7 Da PI: 4.8968 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 272.1 | 1.7e-83 | 209 | 568 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev..sPilkfshltaN 99 ++L+++Ae v +++ +a++lL+r + +as++g+++qRl++yf++AL++r+ r++ +++ ++++ +ee++ ++++ + P+ ++ hlta Cla015142 209 AHVLFAAAEKVGYHQFDRASRLLQRCEWTASSYGNAVQRLVFYFAKALRKRIERQTGRVS----IEDSK----EEEIN-FEALKGCmkLPFQQVMHLTAV 299 799***************************************************333222....22222....22222.2333333116*********** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 qaI e v+ ++vH iD++i G++W a++q+L s++ + l+iT+v+ ++ + +e++g+ L+++A++l++pf+f++++++++ +++ e ++++ Cla015142 300 QAIFEHVKMTTKVHLIDLEIRSGVHWSAFMQSLVdSKEIPIKLLKITAVVT---DKIHLIEQVGKWLENVADSLNIPFSFKPILVSDMMEIKEEVFETED 396 **********************************66778888*********...568889**************************************** PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 +E++a+ + l l r+ ++++sle+ +++++++l+P ++vv+e ea++n +sF++rf+eal + ++ fd+l++ +++++e r+k+E++ g i+n+v Cla015142 397 DEMVAIYCPLVLRRMISRPGSLEN----LMRVIRNLNPSIMVVSEIEANYNLPSFVNRFIEALFFTASYFDCLKTCIGEDDESRRKMEAF-CGVGIENAV 491 ************************....**************************************************************.8******** PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 a eg++r++r + e Wr+ ++++ +++++ls++ +qakl+ + ++ ++ ++e+++++l+ gWk+ p++s+SaW+ Cla015142 492 ASEGSDRVARSVKIEVWRAFFGRFRMEEIELSDSCFSQAKLVPKGFAfGNFCSLEKNHKCLIVGWKETPIISISAWQ 568 ***********************************************777789***********************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 37.451 | 182 | 547 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.9E-81 | 209 | 568 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MADDFFSFTP FDFNGSQAGT LVPSNGIHEK QGTKEDDCPF RMEEFGDFPE NQSGFYQQDI 60 PKIGDETNYE HPNSNCLILD DLLFSNDFTI SELIQEKSKT ISENMGADSF SLNPSKPVWN 120 PCLESLQLLN SYGGKVKRIK GTIVNKRGGG DGASEENKTL STEEILRVAG ARYVHIFPEG 180 HDEFYMATHP CDFALSGLSE DERADVELAH VLFAAAEKVG YHQFDRASRL LQRCEWTASS 240 YGNAVQRLVF YFAKALRKRI ERQTGRVSIE DSKEEEINFE ALKGCMKLPF QQVMHLTAVQ 300 AIFEHVKMTT KVHLIDLEIR SGVHWSAFMQ SLVDSKEIPI KLLKITAVVT DKIHLIEQVG 360 KWLENVADSL NIPFSFKPIL VSDMMEIKEE VFETEDDEMV AIYCPLVLRR MISRPGSLEN 420 LMRVIRNLNP SIMVVSEIEA NYNLPSFVNR FIEALFFTAS YFDCLKTCIG EDDESRRKME 480 AFCGVGIENA VASEGSDRVA RSVKIEVWRA FFGRFRMEEI ELSDSCFSQA KLVPKGFAFG 540 NFCSLEKNHK CLIVGWKETP IISISAWQFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-35 | 237 | 568 | 32 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004136152.1 | 0.0 | PREDICTED: DELLA protein RGL2 | ||||
TrEMBL | A0A0A0K9I9 | 0.0 | A0A0A0K9I9_CUCSA; Uncharacterized protein | ||||
STRING | XP_004136152.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF479 | 33 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 3e-60 | RGA-like 2 |