PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015118
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GATA
Protein Properties Length: 149aa    MW: 15985.5 Da    PI: 9.3912
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015118genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA603e-195689134
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
               C++C+tt TplWR gp g+++LCnaCG++yrk++
  Cla015118 56 CVHCRTTRTPLWRAGPAGPRSLCNACGIRYRKTK 89
               ********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.18E-144894No hitNo description
PROSITE profilePS5011412.8095086IPR000679Zinc finger, GATA-type
SMARTSM004011.1E-1350100IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.9E-155491IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.96E-155587No hitNo description
PfamPF003205.4E-175689IPR000679Zinc finger, GATA-type
PROSITE patternPS0034405681IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MLKAEVIGDL GLDPSIMAFL MNCSADLSAS TFNPSLMPDA SKQSLLNMEP QKQRACVHCR  60
TTRTPLWRAG PAGPRSLCNA CGIRYRKTKN NNNNSNGGVN NKMGKGKKVG EGSLKVRVVS  120
LGREIVEEAI GEEEQAAAML LMALSSGYV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659382.19e-57PREDICTED: GATA transcription factor 15-like
SwissprotQ9FJ102e-21GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A0A0K6B12e-55A0A0A0K6B1_CUCSA; Uncharacterized protein
STRINGXP_008451515.12e-55(Cucumis melo)
STRINGXP_004136159.18e-53(Cucumis sativus)
STRINGXP_004162445.18e-53(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.12e-14GATA transcription factor 23
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]