PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015003
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 306aa    MW: 33831.4 Da    PI: 5.5641
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015003genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.22.9e-27114173359
                -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                Dg++WrKYGqK++ gs+fpr+Y+rC+++   gC ++k+v++s++dp+v +itY+g+H+++
  Cla015003 114 DGFSWRKYGQKDILGSKFPRGYFRCSHRftqGCLATKQVQKSDNDPTVYDITYKGRHTCN 173
                9**************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-27100174IPR003657WRKY domain
PROSITE profilePS5081121.368107170IPR003657WRKY domain
SuperFamilySSF1182904.58E-24109174IPR003657WRKY domain
SMARTSM007741.0E-37112174IPR003657WRKY domain
PfamPF031062.8E-25114172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEFPTLIQEL NQGKQLANQL RNHLHPSSSS SSSSSSSSSS SSSSSHGILL IDQILRSYEN  60
ALLALSAGAP SVTSPLAPLN HTDVVSKKRK VMAKWSEQVK VSSSSANDSG PRCDGFSWRK  120
YGQKDILGSK FPRGYFRCSH RFTQGCLATK QVQKSDNDPT VYDITYKGRH TCNRVHSNTP  180
QEDQNSLLQH PMPPKQEQKP LQQPHDPSGF TFSSDAVQVK SENLDDVEGG LFQPFCAPSP  240
MFGSEVQDDQ SPFRESEFSP TFESNDMFGF CSDFETGFIS IPNSVTNISI GDLEEYCSFD  300
NVELFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-2196174378Disease resistance protein RRS1
5w3x_D3e-2196174378Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461982.11e-170PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A1S3CGE21e-168A0A1S3CGE2_CUCME; probable WRKY transcription factor 53
STRINGXP_008461982.11e-169(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2471333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-40WRKY DNA-binding protein 46