PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014665
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family WRKY
Protein Properties Length: 188aa    MW: 20902.7 Da    PI: 8.1409
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014665genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.32.8e-32109167159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK vk s++prsYYrCt+++C+vkk+++r a+dp++v++tYeg Hnh+
  Cla014665 109 LDDGYRWRKYGQKAVKHSNHPRSYYRCTHHTCNVKKQIQRHAKDPTIVVTTYEGIHNHP 167
                59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-3396168IPR003657WRKY domain
SuperFamilySSF1182903.4E-28102168IPR003657WRKY domain
PROSITE profilePS5081128.862104169IPR003657WRKY domain
SMARTSM007747.0E-37109168IPR003657WRKY domain
PfamPF031064.0E-25110167IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MDGDIMNPQG HLMGTSSLIN NCEIDWDGLF SGSSCLSNIE MEKGICGSED QVIASMGDYD  60
NVVNIGGIKE GDIGGGKNNC NKGKMVMGKR RSAMAPRIAF QTRSAEDVLD DGYRWRKYGQ  120
KAVKHSNHPR SYYRCTHHTC NVKKQIQRHA KDPTIVVTTY EGIHNHPSEK LMETLSPLLK  180
QLQFLSGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-25100166874Probable WRKY transcription factor 4
2lex_A5e-25100166874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818731e-53LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132611e-53LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008452004.12e-92PREDICTED: probable WRKY transcription factor 43
SwissprotQ8VWQ41e-56WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLA0A1S3BSW15e-91A0A1S3BSW1_CUCME; probable WRKY transcription factor 43
STRINGXP_008452004.18e-92(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.19e-58WRKY DNA-binding protein 24