PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014581
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GATA
Protein Properties Length: 258aa    MW: 27671.4 Da    PI: 8.9013
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014581genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.5e-20133167135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Cla014581 133 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 167
                ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.89127163IPR000679Zinc finger, GATA-type
SMARTSM004015.4E-18127182IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-14130176No hitNo description
Gene3DG3DSA:3.30.50.104.0E-17131167IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.35E-13132164No hitNo description
PROSITE patternPS003440133158IPR000679Zinc finger, GATA-type
PfamPF003206.0E-18133167IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MMHHYGGGGG GASSFSMFLS VPNHGGAAHD IMDMYSSSST NYASSSSSSS PSSVDCTLSL  60
GTPSTRSSEF DADKRAAARN HNRRSAGSYV SNFCWDLLHP KHKTSGRTAP PPPPNNITAA  120
GTTGGDPLLA RRCANCDTTS TPLWRNGPRG PKSLCNACGI RFKKEERRAA AATVNSTAAE  180
SNHHHHHPMF NGNYTNSSTW VPHQSPAMTQ KHHPCLSAAI GNDDVGRTEP ENGISFLSWR  240
LNVANTDHRS TLVHDFTR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008452087.11e-129PREDICTED: GATA transcription factor 18-like
TrEMBLA0A1S3BSF91e-128A0A1S3BSF9_CUCME; GATA transcription factor 18-like
STRINGXP_008452087.11e-129(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41053459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.13e-36GATA family protein