PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014516
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GRAS
Protein Properties Length: 553aa    MW: 60695 Da    PI: 4.5652
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014516genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS360.62.3e-1101815532374
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 ++Ll+cA+  +s + ++a + L+r+s+   +dgdp +R+a+yf eAL++rl+    +++k +  +++s+ ns++ l ++k++++++P+ kf+hltaNqa
  Cla014516 181 LKVLLDCARLCDS-EPNRAAKGLNRISKSLREDGDPAERVAFYFGEALRKRLSL---TVMKNCLDTTESDANSEDFLLSYKALNDACPYSKFAHLTANQA 276
                689******8887.66777788*******************************9...6666665556666889*************************** PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                Ilea+e+++++Hi+Df+i qG+QW+aLlqaLa+R+ g+p ++Ri g+ +p+ g   + +l +tg+rL++fA+ l+++fef++ + + +e+l+ ++++v++
  Cla014516 277 ILEATERASKIHIVDFGIVQGVQWAALLQALATRATGKPsRVRISGIPAPSLGdsPAASLYATGNRLSEFAKLLELNFEFEP-ILTPIENLNESSFSVQS 375
                ***********************************666659*********99998999************************.799************** PP

       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                +E+laVn++lql++llde+ +  +   + L+l kslsP++v++ e ea +n+  F +rf +al++ysa+f+sle +lpr+s er  +E+ llgr+i  vv
  Cla014516 376 DEVLAVNFMLQLYNLLDEDPAGVH---NALRLAKSLSPQIVTLGEYEAGLNRIGFYNRFKNALKFYSAIFESLEPNLPRDSPERLQLEKLLLGRRIAGVV 472
                ****************99998888...9************************************************************************ PP

       GRAS 299 acegae...rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                 +e+++   rr r+e + +W++ +e+aGF+pv+ls++a +q k ll +++ s  y++ e+  +++ l W++ pL++vS+Wr
  Cla014516 473 GTEEDSrnkRRVRMEDKDQWKNLMESAGFEPVALSHYAISQGKILLWNYNySSLYTLIESAPEFLsLAWNEVPLLTVSSWR 553
                **9987233566799999********************************9999*****9999999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.149154531IPR005202Transcription factor GRAS
PfamPF035147.9E-108181553IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MASSSSSPNF SFGISASAFS DPFQVAGPPD SADPSFHFSN LDHPSAAFRF FPNFGDATGG  60
EFESDEWMDS LVGGGDSTYS SNLPSACDAY GEFGLYGTDP FNGSPRRLTV ACSPPSELIN  120
RVVLPESSYK MNSVPPPWPS SPQLVKDDGP TNPPVERSVK NDDVVEGSSS AEEVESSSPL  180
LKVLLDCARL CDSEPNRAAK GLNRISKSLR EDGDPAERVA FYFGEALRKR LSLTVMKNCL  240
DTTESDANSE DFLLSYKALN DACPYSKFAH LTANQAILEA TERASKIHIV DFGIVQGVQW  300
AALLQALATR ATGKPSRVRI SGIPAPSLGD SPAASLYATG NRLSEFAKLL ELNFEFEPIL  360
TPIENLNESS FSVQSDEVLA VNFMLQLYNL LDEDPAGVHN ALRLAKSLSP QIVTLGEYEA  420
GLNRIGFYNR FKNALKFYSA IFESLEPNLP RDSPERLQLE KLLLGRRIAG VVGTEEDSRN  480
KRRVRMEDKD QWKNLMESAG FEPVALSHYA ISQGKILLWN YNYSSLYTLI ESAPEFLSLA  540
WNEVPLLTVS SWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1441775531375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453739.10.0PREDICTED: scarecrow-like protein 4
RefseqXP_022136944.10.0scarecrow-like protein 4 isoform X1
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A1S3BWG30.0A0A1S3BWG3_CUCME; scarecrow-like protein 4
STRINGXP_008453739.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein