PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla014433

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

WRKY

Protein Properties

Length: 623aa MW: 67317.4 Da PI: 6.9309

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla014433	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.1	1.2e-30	349	407	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Cla014433 349 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHNHP 407 7*********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.2E-33	333	409	IPR003657	WRKY domain
SuperFamily	SSF118290	1.12E-27	341	409	IPR003657	WRKY domain
PROSITE profile	PS50811	29.677	343	409	IPR003657	WRKY domain
SMART	SM00774	1.2E-36	348	408	IPR003657	WRKY domain
Pfam	PF03106	2.1E-26	350	407	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence Send to blast
MDKGWGLTLR DSDQSIGFFS NKPPPPPTTV NSFQRMFQGL EFPGKLGRTD DTDATPSLAD 60 ENRLPVNEVD FFSDKKRVVD DREDQDSKPS TNIIATTAIN KDDKPFTAPR TSFNLVNTGL 120 HLLTANTGSD QSTVDDGISS DGEDKRAKNE LAQLQVELQR MNAENHKLRD MLSHVSNNYS 180 SLQMHLLTLM QQQQQNQASE PAHEREIGEK KSTEIKHEVG RVMVPRQFMD LGPSGNNNNN 240 NTGESDELLC NSSSDERTRS GSPLNNNNTT ETASKKRDHA EITAPSDHEN SKRPNPREES 300 PESESQGWGG PNHKPPRFNS SKPLDQSTEA TMRKARVSVR ARSEAPMISD GCQWRKYGQK 360 MAKGNPCPRA YYRCTMAVGC PVRKQVQRCA EDRTILITTY EGNHNHPLPP AAMAMASTTT 420 AAATMLLSGS MSSADHNLMN PNLLARAILP CSSSMATISA SAPFPTITLD LTHTPNPLQF 480 QRPAATPFHV PFPGGQPPSA AVAAQLPQVL GQALYNNQSK FSGLQLSHEM GANSSHLGHH 540 QITQPATPAQ PGGASFADTL SAATAAITAD PNFTAALAAA ISSIIGGAHS NNNSNTNTTN 600 NTTTTNNNNG SSNNSKISSF PGN

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence Send to blast

MDKGWGLTLR DSDQSIGFFS NKPPPPPTTV NSFQRMFQGL EFPGKLGRTD DTDATPSLAD  60
ENRLPVNEVD FFSDKKRVVD DREDQDSKPS TNIIATTAIN KDDKPFTAPR TSFNLVNTGL  120
HLLTANTGSD QSTVDDGISS DGEDKRAKNE LAQLQVELQR MNAENHKLRD MLSHVSNNYS  180
SLQMHLLTLM QQQQQNQASE PAHEREIGEK KSTEIKHEVG RVMVPRQFMD LGPSGNNNNN  240
NTGESDELLC NSSSDERTRS GSPLNNNNTT ETASKKRDHA EITAPSDHEN SKRPNPREES  300
PESESQGWGG PNHKPPRFNS SKPLDQSTEA TMRKARVSVR ARSEAPMISD GCQWRKYGQK  360
MAKGNPCPRA YYRCTMAVGC PVRKQVQRCA EDRTILITTY EGNHNHPLPP AAMAMASTTT  420
AAATMLLSGS MSSADHNLMN PNLLARAILP CSSSMATISA SAPFPTITLD LTHTPNPLQF  480
QRPAATPFHV PFPGGQPPSA AVAAQLPQVL GQALYNNQSK FSGLQLSHEM GANSSHLGHH  540
QITQPATPAQ PGGASFADTL SAATAAITAD PNFTAALAAA ISSIIGGAHS NNNSNTNTTN  600
NTTTTNNNNG SSNNSKISSF PGN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-21	335	411	1	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269\|PubMed:25733771}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00428	DAP	Transfer from AT4G04450	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008440027.1	0.0	PREDICTED: probable WRKY transcription factor 31
Swissprot	Q9XEC3	1e-154	WRK42_ARATH; WRKY transcription factor 42
TrEMBL	A0A1S3B045	0.0	A0A1S3B045_CUCME; probable WRKY transcription factor 31
STRING	XP_008440027.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF866	34	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22070.1	1e-121	WRKY DNA-binding protein 31